YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC222.08c
Organism:	Schizosaccharomyces pombe
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC222.08c.

Description	E-value	Query Range	Subject Range
gi\|34398203 - gi\|34398203\|gb\|AAQ67191.1\| CAD [Platypalpus sp. NCSU-99071984]	183.0	[0..1]	[232..111]
gi\|34398171 - gi\|34398171\|gb\|AAQ67175.1\| CAD [Efflatouniella aegyptiaca]	182.0	[0..4]	[233..114]
gi\|34398181 - gi\|34398181\|gb\|AAQ67180.1\| CAD [Hybos sp. NCSU-99071974]	180.0	[0..1]	[232..111]
gi\|34398161 - gi\|34398161\|gb\|AAQ67170.1\| CAD [Anthalia sp. NCSU-99071950]	180.0	[0..1]	[232..110]
gi\|34398201 - gi\|34398201\|gb\|AAQ67190.1\| CAD [Phora sp. JS299]	180.0	[0..4]	[232..114]
gi\|34398211 - gi\|34398211\|gb\|AAQ67195.1\| CAD [Wiedemannia sp. NCSU-99072188]	179.0	[0..7]	[234..117]
gi\|34398159 - gi\|34398159\|gb\|AAQ67169.1\| CAD [Agapophytus bicolor]	179.0	[0..7]	[233..117]
gi\|34398189 - gi\|34398189\|gb\|AAQ67184.1\| CAD [Meghyperus sudeticus]	179.0	[0..4]	[230..114]
gi\|34398163 - gi\|34398163\|gb\|AAQ67171.1\| CAD [Bombylius major]	177.0	[0..7]	[233..117]
gi\|34398205 - gi\|34398205\|gb\|AAQ67192.1\| CAD [Rhamphomyia sp. NCSU-97010438]	177.0	[0..7]	[232..117]

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Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSASMFGSL KTNAVDESQL KARIGVLALQ GAFIEHINIM NSIDGVISFP VKTAKDCENI  60
   61 DGLIIPGGES TTIGKLINID EKLRDRLEHL VDQGLPIWGT CAGMILLSKK SRGGKFPDPY 120
  121 LLRAMDIEVT RNYFGPQTMS FTTDITVTES MQFEATEPLH SFSATFIRAP VASTILSDDI 180
  181 NVLATIVHEG NKEIVAVEQG PFLGTSFHPE LTADNRWHEW WVKERVLPLK EKKD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.522879
Match:	1q7rA
Description:	X-ray crystallographic analysis of a predicted amidotransferase from B. stearothermophilus at 1.9 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.30391542469987	bayes_pls_golite062009
binding	0.799270855996775	bayes_pls_golite062009
ligase activity	0.606811845310629	bayes_pls_golite062009
anthranilate synthase activity	0.198608229600186	bayes_pls_golite062009
protein binding	0.0152024556625711	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: