YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC4F10.16c
Organism:	Schizosaccharomyces pombe
Length:	1367 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC4F10.16c.

Description	E-value	Query Range	Subject Range
gi\|38100389, gi\|... - gi\|86196472\|gb\|EAQ71110.1\| hypothetical protein MGCH7_ch7g517 [Magnaporthe grisea 70-15], gi\|3997060...	851.0	[0..47]	[1365..2]
gi\|85114063 - gi\|85114063\|ref\|XP_964630.1\| hypothetical protein NCU07443 [Neurospora crassa OR74A] gi\|28926419, gi\|... - gi\|32414499\|ref\|XP_327729.1\| hypothetical protein [Neurospora crassa], gi\|28926419\|gb\|EAA35394.1\| hy...	843.0	[0..1]	[1319..1]
gi\|67903370, gi\|... - gi\|67903370\|ref\|XP_681941.1\| hypothetical protein AN8672.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	840.0	[0..22]	[1365..1]
gi\|46128435, gi\|... - gi\|46128435\|ref\|XP_388771.1\| hypothetical protein FG08595.1 [Gibberella zeae PH-1], gi\|42549780\|gb\|E...	839.0	[0..23]	[1321..6]
gi\|114190928, gi... - gi\|115386778\|ref\|XP_001209930.1\| hypothetical protein ATEG_07244 [Aspergillus terreus NIH2624], gi\|1...	823.0	[0..40]	[1334..18]
gi\|70984727, gi\|... - gi\|70984727\|ref\|XP_747870.1\| phospholipid-translocating P-type ATPase domain-containing protein [Asp...	821.0	[0..22]	[1353..1]
DNF2 - Aminophospholipid translocase (flippase) that localizes primarily to the plasma membrane; contribute... ATC4_YEAST - Phospholipid-transporting ATPase DNF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DN...	820.0	[0..16]	[1342..116]
gi\|44986070 - gi\|44986070\|gb\|AAS54610.1\| AGR120Cp [Ashbya gossypii ATCC 10895] gi\|44986070, gi\|... - gi\|45201216\|ref\|NP_986786.1\| AGR120Cp [Ashbya gossypii ATCC 10895], gi\|44986070\|gb\|AAS54610.1\| AGR12...	819.0	[0..62]	[1367..130]
gi\|83772590 - gi\|83772590\|dbj\|BAE62718.1\| unnamed protein product [Aspergillus oryzae] gi\|169778773 - gi\|169778773\|ref\|XP_001823851.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|238499343, gi... - gi\|238499343\|ref\|XP_002380906.1\| phospholipid-translocating P-type ATPase domain-containing protein ...	807.0	[0..22]	[1334..1]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSLINFDAI SSLKSSLHGL SICAFNHLHH VPQHNGSLAH EGPTNQTDYS SRHHESQFSQ  60
   61 EAHAEQRSRD DEEANSFEGS CNNSDQSWTS RVTSKKNEAG TESGDASVRR IYVTSIPEEH 120
  121 RHLPSQWFPS NKIRTTKYTP VSFIPKNLWN QFKNIANAFF LFVTLLQCIP LFCPEHLGLS 180
  181 FIPLSVILLT TAIKDGIEDY RRCVLDKKFN N

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [212-1367]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLTWKLVGFN NANALGEHIG LWRKLKKFIS HTVADMSYCL KNSGISSGLA TLTVDNISHR  60
   61 HSLESDSAFT LSSVSQDSLE IHEIGNSGPS NSFSVIQEQS TGSSNAKFER VCRKSLLVGD 120
  121 IVKVLADEAI PADLLILSTE NSNGVCYVET KNLDGETNLK DKYALCSTKC CKSEYRCSAA 180
  181 SFWVECEQPH ADLYSLNGVV KAPGAVQSPS ESTNGRKIHE EPFSISNVLL CGCTLRNSKW 240
  241 VIGLVLYTGS ETRIQKNRGL TPSKRSRITR DLNWTIILNF LLLFAMCLFS GVLRSIYSAQ 300
  301 NNSARVFELS KNSNTAPAHG IISIFTSLIL FQNLVPISLY ITMDIVRSIQ SYFIFSDREM 360
  361 YDEKLDCPCS PKSWNISDDL GQIEYIFSDK TGTLTQNIMS FKKCSINGIR YGKSHNEDTC 420
  421 IKKRRNLNYN ENLSCKVDLD KKKMLETLSL SDSPNPESIT FISSKFVDHL QSNENYIQTE 480
  481 ACFEFFKALA LCHSVVTDVQ DETLIYNAQS PDEEALVKVA RDFGFTLLNT KNRRYTIRIR 540
  541 GENKNFRVLD IIPFTSTRKR MSVIIRDEDG IIHLICKGAD TVIFPRLSSG QNNIIEKTKK 600
  601 HLASFSSEGF RTLCIARRTI DKQDYLEWKV NFNEANSAIH ERNEKVSKVS EMIEQELELL 660
  661 GGTAIEDKLQ ENVPETIALL AIAGIKLWVL TGDKVETAIN IGYSCNLLDP NMTIFRIDAN 720
  721 SFGALEEVEA FIRNTLCFNF GYMGTDEEFR FLLKDHSPPS PKHAIVIDGD ALNFVLSEQV 780
  781 SFLFLMLCKQ CKTVLCCRVS PSQKAAVVAL VKKSLNVVTL AIGDGANDVS MIQEADVGVG 840
  841 IKGVEGQAAS MSADYAIGQF SFLGRLLLVH GRWDYKRMSQ MISFFFYKNV IWTFILFWYQ 900
  901 FYNEFDGNYI FDYTYVMLFN LLFTSLPVII AGCFDQDVDA SVSMKNPSLY QRGILGLEWN 960
  961 GKRFWSYMLD GIYQSLVCFG VALFVFKFGD FVSWTGRNIE CIEDIGLFIS SPTIFVINIF1020
 1021 ILMNQERLNL ISLITWMFSI GVFWIWTFIY SEVGPSYAFH KSASRTCQTF GFWCVTVLTI1080
 1081 ALCLLPRFSY ICLQKLFYPR DIDLLRRRLC AKSDDETSSS SSFATDIEMC EQCNDPLSSK1140
 1141 KNSGIVTSVS FDDSNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	144.0
Match:	1iwoA
Description:	Calcium ATPase, transduction domain A; Calcium ATPase, catalytic domain P; Calcium ATPase; Calcium ATPase, transmembrane domain M
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits