YRC Public Data Repository - Protein Structure Prediction

Protein:	hri2
Organism:	Schizosaccharomyces pombe
Length:	639 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hri2.

Description	E-value	Query Range	Subject Range
gi\|62857006 - gi\|62857006\|dbj\|BAD95888.1\| Ser/Thr protein kinase [Lotus japonicus]	258.0	[0..304]	[635..39]
gi\|92869391 - gi\|92869391\|gb\|ABE79147.1\| Protein kinase; Kinase-associated, C-terminal; UBA-like [Medicago truncat...	256.0	[0..304]	[635..38]
gi\|322596, gi\|11... - gi\|6714479\|gb\|AAF26165.1\|AC008261_22 putative SNF1-related protein kinase [Arabidopsis thaliana], pi...	255.0	[0..304]	[635..38]
gi\|7672782 - gi\|7672782\|gb\|AAF66639.1\|AF143743_1 SNF1 [Lycopersicon esculentum]	254.0	[0..304]	[635..38]
gi\|66710732 - gi\|66710732\|emb\|CAI96819.1\| SNF1-related protein kinase [Pisum sativum]	252.0	[0..304]	[635..38]
gi\|66710730 - gi\|66710730\|emb\|CAI96818.1\| SNF1-related protein kinase [Vicia faba]	251.0	[0..304]	[635..38]
gi\|4567091 - gi\|4567091\|gb\|AAD23582.1\|AF128443_1 SNF-1-like serine/threonine protein kinase [Glycine max]	250.0	[0..304]	[635..39]
gi\|42539899 - gi\|42539899\|gb\|AAS18877.1\| SNF1-related protein kinase alpha subunit [Nicotiana attenuata]	249.0	[0..304]	[635..38]
gi\|7434354, gi\|1... - pir\|\|T10449 probable serine/threonine-specific protein kinase (EC 2.7.1.-) - cucumber, gi\|1743009\|em...	249.0	[0..304]	[635..27]

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Predicted Domain #1

Region A:
Residues: [1-272]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFFNAHKSA EDGNYSETTN AISLKNERQS RDLSVNKHGR MLLTALLENF CQLYDNNPAK  60
   61 SKRLFALICH TLQKIGILEE EYIEELAAVR SNYQDALHHL ILQAREAIRL DDAEERLLAL 120
  121 PDPTNVFEKF PQETALSKFS VDGLNVRQFR FRDLTLESWL QSRNSRYIED FEEYSLLGRG 180
  181 GFGSVYHVRN KIDGAEYAMK KINSTFQQMS YSKIFREIKC LAKMDHPNVI RYFSSWVEST 240
  241 TEATQMPIVM SKNSSRVLGT SSYCDVNGMD SI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.81
Match:	2acxA
Description:	No description for 2acxA was found.

Predicted Domain #2

Region A:
Residues: [273-639]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IFEPTESSAL TDDILFAEDP GTESIISTSR KSSYSSTTES SNFENLESPR NLHDSNVSTF  60
   61 NNTTILDDDY SSSMHISKTG PTHSFIIYIQ MQLCFDDLES YLIRRNHFLS FPLCKEQIQL 120
  121 HTDLFRMIIN GVMYVHEGVN LIHRDIKPSN IFLAKSLPED RGSVPLISYN DKNDLKEYIT 180
  181 PKIGDFGLVV ENKKNTETAL SFLERNHLPN LQDETQHIGT ATYAAPELLD AMSSQHNKFT 240
  241 KKIDTFSLGM VLFELLHPFQ TNMERATKLQ DLRRGNLPEE FVEQHICESS LILWMTAKDP 300
  301 TKRPSLLEVL NCGLLLPNQV SMPNISNIVS TNHLDVETQM KLIMDENQRL REQIAVLRSR 360
  361 IQHLETR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.0
Match:	2bdwA
Description:	Crystal Structure of the Auto-Inhibited Kinase Domain of Calcium/Calmodulin Activated Kinase II
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits