YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC27E2.06c
Organism:	Schizosaccharomyces pombe
Length:	539 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC27E2.06c.

Description	E-value	Query Range	Subject Range
gi\|56908077, gi\|... - gi\|56961843\|ref\|YP_173565.1\| methionyl-tRNA synthetase [Bacillus clausii KSM-K16], gi\|56908077\|dbj\|B...	395.0	[0..17]	[538..2]
SYM_BACHD - Methionyl-tRNA synthetase OS=Bacillus halodurans GN=metG PE=3 SV=1 SYM_BACHD - Methionine--tRNA ligase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 91...	393.0	[0..16]	[538..3]
gi\|89149759, gi\|... - gi\|89202242\|ref\|ZP_01180970.1\| Methionyl-tRNA synthetase, class Ia:Methionyl-tRNA synthetase, beta s...	392.0	[0..16]	[538..3]
SYM_THETN - Methionyl-tRNA synthetase OS=Thermoanaerobacter tengcongensis GN=metG PE=3 SV=1 SYM_CALS4 - Methionine--tRNA ligase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JC...	390.0	[0..18]	[538..2]
gi\|228925292, gi... - gi\|228925292\|ref\|ZP_04088389.1\| Methionyl-tRNA synthetase [Bacillus thuringiensis serovar pondicheri... gi\|229119701, gi... - gi\|229119701\|ref\|ZP_04248963.1\| Methionyl-tRNA synthetase [Bacillus cereus 95/8201], gi\|228663726\|gb... gi\|228815802, gi... - gi\|228943845\|ref\|ZP_04106231.1\| Methionyl-tRNA synthetase [Bacillus thuringiensis serovar monterrey ... gi\|228931541, gi... - gi\|228931541\|ref\|ZP_04094448.1\| Methionyl-tRNA synthetase [Bacillus thuringiensis serovar andalousie... gi\|49477589, gi\|... - gi\|49477589\|ref\|YP_034392.1\| methionyl-tRNA synthetase [Bacillus thuringiensis serovar konkukian str... gi\|218901239, gi... - gi\|218901239\|ref\|YP_002449073.1\| methionyl-tRNA synthetase [Bacillus cereus AH820], gi\|218535747\|gb\|... gi\|196036355, gi... - gi\|196036355\|ref\|ZP_03103752.1\| methionyl-tRNA synthetase [Bacillus cereus W], gi\|195990985\|gb\|EDX54...	390.0	[0..16]	[538..3]
gi\|228657873, gi... - gi\|229125556\|ref\|ZP_04254589.1\| Methionyl-tRNA synthetase [Bacillus cereus BDRD-Cer4], gi\|228657873\|... SYM1_BACCR - Methionine--tRNA ligase 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / N...	390.0	[0..16]	[538..3]
gi\|89207209, gi\|... - gi\|89207209\|ref\|ZP_01185755.1\| Methionyl-tRNA synthetase, class Ia:Methionyl-tRNA synthetase, beta s... gi\|228751692, gi... - gi\|229009548\|ref\|ZP_04166775.1\| Methionyl-tRNA synthetase [Bacillus mycoides DSM 2048], gi\|228751692... gi\|229131046, gi... - gi\|229131046\|ref\|ZP_04259959.1\| Methionyl-tRNA synthetase [Bacillus cereus BDRD-ST196], gi\|228652383... gi\|228721426, gi... - gi\|229053885\|ref\|ZP_04195320.1\| Methionyl-tRNA synthetase [Bacillus cereus AH603], gi\|228721426\|gb\|E...	389.0	[0..15]	[538..2]
gi\|51978648, gi\|... - gi\|52145179\|ref\|YP_081651.1\| methionyl-tRNA synthetase [Bacillus cereus E33L], gi\|51978648\|gb\|AAU201...	388.0	[0..16]	[538..3]
SYM_GEOSE - Methionine--tRNA ligase OS=Geobacillus stearothermophilus GN=metG PE=3 SV=1	388.0	[0..18]	[538..3]
gi\|75759600, gi\|... - gi\|75759600\|ref\|ZP_00739686.1\| Methionyl-tRNA synthetase / Protein secretion chaperonin CsaA [Bacil...	388.0	[0..12]	[538..8]

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Predicted Domain #1

Region A:
Residues: [1-539]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRKGICRLI HQVSESSKKP YFLTTPIFYV NAAPHLGHLY SLVLTDAIAR FQNLKPDVSV  60
   61 ISSTGTDEHG LKVQTVAQTE GVSPLQLCDR NSKRFADLAV AANTKFTHFI RTTNPKHQAS 120
  121 VQEFWKTIQK AGMISFERHE GWYCVSDETF YPESAIQKVV DPATKQEKRV SMETGKEVQW 180
  181 SSEMNYHFLL SKFQSRLIEH YNKNPNFVQP SIFHTQVLEE LKTGISDLSI SRPKQRLSWG 240
  241 IPVPGNSQQT IYVWLDALIN YISVIGYPWL NEKSSLSAGW PANMHVIGKD IIRFHCIYWP 300
  301 AFLMAAGLPL PEKILVHSHW TMNKVKMSKS LGNVVDPFWL IEKYGVDTIR YYLLKRGRLT 360
  361 SDSNFDIEEL EKDEEHDLRR SLGVLLSRLQ SKKLFISNEI QKQWHKKDDF TEYEDIVHEL 420
  421 IELPVVCAQS IDGGCVYEVI NLVQSVLRRV TKLFQLKEPW KLSDDSQEKI DTLMLVAHSL 480
  481 RISGILLQPI MPTKSTELLD QLGIPKNQRS LQNATNVFEP TEFTFHSGNN SHLFDKRTQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	88.69897
Match:	2csxA
Description:	Crystal structure of Aquifex aeolicus methionyl-tRNA synthetase complexed with tRNA(Met)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits