YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC23H3.15c
Organism:	Schizosaccharomyces pombe
Length:	325 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC23H3.15c.

Description	E-value	Query Range	Subject Range
MDN1_GIAIN - Midasin OS=Giardia intestinalis GN=MDN1 PE=3 SV=1	188.0	[0..11]	[306..4054]
GL50803_39312 - \| organism=Giardia_Assemblage_A_isolate_WB \| product=Midasin \| location=GLCHR02:40567-55074(+) \| len... ctg02_53\|39312\|M... - null gi\|157432603, gi... - gi\|71070869\|ref\|XP_768005.1\| hypothetical protein GLP_74_7403_21910 [Giardia lamblia ATCC 50803], gi...	187.0	[0..11]	[306..4054]
SPCC737.08 - midasin MDN1_SCHPO - Midasin OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mdn1 PE=1 SV=1	167.0	[0..23]	[318..3929]
gi\|11359087, gi\|... - gi\|1749690\|dbj\|BAA13902.1\| unnamed protein product [Schizosaccharomyces pombe], gi\|11359087\|pir\|\|T43...	158.0	[0..1]	[310..1]
CE32724 - WBGene00004149 locus:pqn-66 status:Predicted TR:P91448 protein_id:AAB37876.3	136.0	[0..25]	[305..559]
gi\|109479980, gi... - ref\|XP_243381.2\| similar to RTl1 [Rattus norvegicus], gi\|109479980\|ref\|XP_001070232.1\| PREDICTED: si...	134.0	[0..18]	[254..2]
CG13185-PB - This gene is referred to in FlyBase by the symbol Dmel\CG13185 (CG13185, FBgn0033661). It is a prote...	130.0	[0..11]	[324..4503]
gi\|23489716 - gi\|23489716\|gb\|EAA21657.1\| hypothetical protein [Plasmodium yoelii yoelii] gi\|83286279 - gi\|83286279\|ref\|XP_730092.1\| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]	128.0	[0..5]	[312..1798]
gi\|30022804, gi\|... - gi\|30022804\|ref\|NP_834435.1\| spore germination protein IA [Bacillus cereus ATCC 14579], gi\|29898363\|... gi\|229130012, gi... - gi\|229130012\|ref\|ZP_04258976.1\| Spore germination protein gerIA [Bacillus cereus BDRD-Cer4], gi\|2286...	119.0	[0..2]	[231..22]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYQQRANDS MNSAKQYSSS AGAVHNSDEP FSSSGAPQNR NFDTSYTSEI PSNSSRAAND  60
   61 MGTDIGSGDP YAGMTSDTKK GFNSVESRKK EQSDVRGGDT SYSRRHDDSS YSSNKYSTGG 120
  121 NDSYSSGGRN EDYSTSGGSY TTDPSRTDDT ASYGQSQYNQ SRKTTQGGDY GEDYSQSYPT 180
  181 DTYGSRQKAT PSDTVGGGAY DYSSSGSHTH GGSHGTEHRG GSYGNDNTAN K

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [232-325]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRGAVSSAGY SGEGYGKGTY ATDTTAEANR RAATGTRNAR TTAQRNAQLA EDEHVSMGDK  60
   61 MKGNMEKMAG KLTRDPELVQ KGEDLKTGHH SERY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits