YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1235.01
Organism:	Schizosaccharomyces pombe
Length:	658 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1235.01.

Description	E-value	Query Range	Subject Range
gi\|157767776 - gi\|157767776\|ref\|XP_001667368.1\| Hypothetical protein CBG01856 [Caenorhabditis briggsae AF16] gi\|187037629, gi... - gi\|39590902\|emb\|CAE58682.1\| Hypothetical protein CBG01856 [Caenorhabditis briggsae], gi\|187037629\|em...	265.0	[0..3]	[633..1181]
gi\|33310026 - gi\|33310026\|gb\|AAQ03243.1\|AF414112_1 putative cell wall protein FLO11p [Candida albicans] gi\|68482880, gi\|... - gi\|68482880\|ref\|XP_714666.1\| putative cell wall adhesin [Candida albicans SC5314], gi\|46436253\|gb\|EA...	236.0	[0..1]	[639..135]
SLP1_CLOTM, SLAP... - (Q06852) Cell surface glycoprotein 1 precursor (Outer layer protein B) (S-layer protein 1), Cell sur...	224.0	[0..5]	[599..768]
SLAP1_CLOTH - Cell surface glycoprotein 1 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 ...	222.0	[0..2]	[599..1414]
gi\|37930527, gi\|... - gi\|37930527\|gb\|AAP74661.1\| elicitor-like transglutaminase M81 [Phytophthora infestans], gi\|23505399\|...	218.0	[0..3]	[639..689]
MUC17 - mucin 17, cell surface associated	215.0	[0..2]	[640..1200]

Back

Predicted Domain #1

Region A:
Residues: [1-363]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTATIIAAIT ITTIVIITPM EEITTMTIPM EEITTMTIPM EEITTMTIPM EEITTMTTPM  60
   61 EEITTITTPM EETTTITPMV ETTTILPMAA MTTPMVETTT IPTVETTTTP MVETTTITPM 120
  121 VETTTITPMV EAMITLMEET MTTPMEETTT ILPMAAMTTP MEETTTTTPM VETTTIPTVE 180
  181 TMTTPMVEAM TILPMAAMTT PMEETTTTPM EETTTTPMVE TMITPMVEAM TTPTEVVGRS 240
  241 MVSTIRTTTP MEAMITPTVE TTTLPTAAMT TPVEETTTTP MVETMITPTV VTTTTPMVET 300
  301 MITPTVVTTT PMVILVMAVV METTINIVGN NDSIPSQNFK SGKTFVSNAN SSNSNDGSSS 360
  361 KSL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.71
Match:	1h1kI
Description:	THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [364-658]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DVGSFVNAFK QLNVNDNSSN NNSSGNTDSS TIGYAAVFAA AGKFFSQHSC DLASGNKSAQ  60
   61 EGQNQFLSMV ESEAKNLMNK TNYSANQSQN GNSQNSGNPV SQAIDLAKSL FQNRNLLTKL 120
  121 AQSGVLTNAA QGSSGGLSAA AVSGLIGSFM GSSSNNSNSS NNNSNTSNNN SNTSNNESMV 180
  181 SKLSSLSGMA SSFLGSSGNN NNNNNSNSGN YNNNNSGNNN QQHQQSSSSL QGLASSFLNS 240
  241 SSGNSNKQNY NNNNNQNYGN NNNQNYNNNN NSSQGGNSQG GSGLLGQAVN MFLKS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.33
Match:	1dv4A
Description:	30S subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits