YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC320.12
Organism:	Schizosaccharomyces pombe
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC320.12.

Description	E-value	Query Range	Subject Range
ATP23 - Putative metalloprotease of the mitochondrial inner membrane, required for processing of Atp6p; has ...	293.0	[0..6]	[185..83]
ATP23_ASHGO - Mitochondrial inner membrane protease ATP23 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGS... ATP23_ASHGO - Mitochondrial inner membrane protease ATP23 OS=Ashbya gossypii GN=ATP23 PE=3 SV=1	285.0	[0..12]	[185..64]
ATP23_MAGO7 - Mitochondrial inner membrane protease ATP23 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FG... ATP23_MAGGR - Mitochondrial inner membrane protease ATP23 OS=Magnaporthe grisea GN=ATP23 PE=3 SV=1	282.0	[0..8]	[185..83]
ATP23_CANAL - Mitochondrial inner membrane protease ATP23 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=A... ATP23_CANAL - Mitochondrial inner membrane protease ATP23 OS=Candida albicans GN=ATP23 PE=3 SV=1	281.0	[0..6]	[185..54]
ATP23_NEUCR - Mitochondrial inner membrane protease atp23 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / C... ATP23_NEUCR - Mitochondrial inner membrane protease atp-23 OS=Neurospora crassa GN=atp-23 PE=3 SV=3	280.0	[0..8]	[185..92]
gi\|46125165, gi\|... - gi\|46125165\|ref\|XP_387136.1\| hypothetical protein FG06960.1 [Gibberella zeae PH-1], gi\|42553577\|gb\|E...	277.0	[0..7]	[185..69]
ATP23_KLULA - Mitochondrial inner membrane protease ATP23 OS=Kluyveromyces lactis GN=ATP23 PE=3 SV=1 ATP23_KLULA - Mitochondrial inner membrane protease ATP23 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / D...	276.0	[0..10]	[185..60]
ATP23_CANGA - Mitochondrial inner membrane protease ATP23 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 37... ATP23_CANGA - Mitochondrial inner membrane protease ATP23 OS=Candida glabrata GN=ATP23 PE=3 SV=1	275.0	[0..9]	[185..39]
ATP23_DEBHA - Mitochondrial inner membrane protease ATP23 OS=Debaryomyces hansenii GN=ATP23 PE=3 SV=1 ATP23_DEBHA - Mitochondrial inner membrane protease ATP23 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / ...	274.0	[0..6]	[185..56]
ATP23_COCIM - Mitochondrial inner membrane protease ATP23 OS=Coccidioides immitis (strain RS) GN=ATP23 PE=3 SV=1 ATP23_COCIM - Mitochondrial inner membrane protease ATP23 OS=Coccidioides immitis GN=ATP23 PE=3 SV=1	270.0	[0..1]	[185..51]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEDPQSWSK ERKNCERVKR ALMSQSPVII FLKTALDRLN CNIEAKDISC QPCDAQSTGG  60
   61 YIPGKGIVLC ENRLYTKKMA ENTIAHEMIH MFDDHRFEVD WNNLRHQACS EIRASSMSGE 120
  121 CRWTKELRFG NIKTFRKHHQ ECVKRRATIS VQGNPNCKSK EQAEAIVEEV FNSCFNDFRP 180
  181 FEKIY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits