YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC119.05c
Organism:	Schizosaccharomyces pombe
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC119.05c.

Description	E-value	Query Range	Subject Range
YES_CHICK - Tyrosine-protein kinase Yes OS=Gallus gallus GN=YES1 PE=1 SV=3	139.0	[0..55]	[240..5]
gi\|85074937 - gi\|85074937\|ref\|XP_965836.1\| hypothetical protein NCU00696 [Neurospora crassa OR74A] gi\|28927649, gi\|... - gi\|32408791\|ref\|XP_324876.1\| hypothetical protein [Neurospora crassa], gi\|28927649\|gb\|EAA36600.1\| pr...	139.0	[0..8]	[296..13]
gi\|66797 - gi\|66797\|pir\|\|TVFVG9 protein-tyrosine kinase (EC 2.7.1.112) yes - avian sarcoma virus Y73	139.0	[0..61]	[240..3]
gi\|49609368 - gi\|49609368\|emb\|CAF06179.1\| protein-tyrosine kinase [Danio rerio]	138.0	[0..74]	[240..17]
gi\|148231247, gi... - gi\|34784684\|gb\|AAH57707.1\| Yes protein [Xenopus laevis], gi\|148231247\|ref\|NP_001079938.1\| proto-onco...	136.0	[0..74]	[240..19]
gi\|89268164 - gi\|89268164\|emb\|CAJ81699.1\| Yamaguchi sarcoma viral (v-yes) oncogene homolog 1 [Xenopus tropicalis]	135.0	[0..74]	[240..19]

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Predicted Domain #1

Region A:
Residues: [1-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHKNYLNHV IRGIYNDFQF LVDEGVVERS ALDWVHANIH LQDGPASPVT APAAQPVESS  60
   61 VPLPLPKRKS SVEKRAGSVA SAVAAMSLSQ NSGEKRTPEE PRKLPGVPAP QKQSEASSVN 120
  121 SSTEKLPPPP SYPGPNTAHK NVERVLAMYD FPGPDAGDLG FHAGEVIIVL EHVNNDWWRG 180
  181 ELNGKEGIFP SNYVRLLEDS AVKAQPPPPP PQQNYPPAAS SSAPPMQYQQ TAYPPQQAPY 240
  241 PPVQAYPQAP QQPIVVAQPT EHKHSSTFKK IGSGLGSAFV FGAGATAGAD LVNSIF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.30103
Match:	2h8hA
Description:	No description for 2h8hA was found.

Predicted functions:

Term	Confidence	Notes
protein binding	2.29371158534719	bayes_pls_golite062009
binding	2.28128893430792	bayes_pls_golite062009
cytoskeletal protein binding	2.02807082768447	bayes_pls_golite062009
actin binding	1.61769239689139	bayes_pls_golite062009
actin filament binding	0.81415274660559	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: