YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC16A11.01
Organism:	Schizosaccharomyces pombe
Length:	328 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC16A11.01.

Description	E-value	Query Range	Subject Range
gi\|42554599, gi\|... - gi\|46126095\|ref\|XP_387601.1\| hypothetical protein FG07425.1 [Gibberella zeae PH-1], gi\|42554599\|gb\|E...	305.0	[0..19]	[257..6]
gi\|85099236 - gi\|85099236\|ref\|XP_960740.1\| hypothetical protein NCU03660 [Neurospora crassa OR74A] gi\|32404698, gi\|... - gi\|32404698\|ref\|XP_322962.1\| hypothetical protein ( (AL451013) conserved hypothetical protein [Neuro...	300.0	[0..21]	[236..3]
gi\|40743671, gi\|... - gi\|67539196\|ref\|XP_663372.1\| hypothetical protein AN5768.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	289.0	[0..18]	[236..2]
gi\|39972361, gi\|... - gi\|39972361\|ref\|XP_367571.1\| hypothetical protein MGG_07482 [Magnaporthe grisea 70-15], gb\|EAA53205....	285.0	[0..21]	[236..5]
orf19.2726, orf1... - orf19.2726 CGDID:CAL0004202 Assembly 19, Contig19-10158 (133754, 134692) CDS, translated using codon... gi\|68470938, gi\|... - gi\|68471394\|ref\|XP_720245.1\| hypothetical protein CaO19.10240 [Candida albicans SC5314], gi\|68470938...	281.0	[0..16]	[246..8]
gi\|70991415, gi\|... - gi\|70991415\|ref\|XP_750556.1\| FK506 suppressor Sfk1 [Aspergillus fumigatus Af293], gi\|66848189\|gb\|EAL... gi\|159124113 - gi\|159124113\|gb\|EDP49231.1\| FK506 suppressor Sfk1, putative [Aspergillus fumigatus A1163]	267.0	[0..18]	[236..2]
SFK1_YEAST - Protein SFK1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFK1 PE=1 SV=1 SFK1 - Plasma membrane protein that may act together with or upstream of Stt4p to generate normal levels of...	263.0	[0..13]	[236..5]
gi\|45185309, gi\|... - gi\|45185309\|ref\|NP_983026.1\| ABR080Wp [Ashbya gossypii ATCC 10895], gi\|44980967\|gb\|AAS50850.1\| ABR08... gi\|44980967 - gi\|44980967\|gb\|AAS50850.1\| ABR080Wp [Ashbya gossypii ATCC 10895]	262.0	[0..15]	[236..6]
gi\|49070262, gi\|... - gi\|71006572\|ref\|XP_757952.1\| hypothetical protein UM01805.1 [Ustilago maydis 521], ref\|XP_399420.1\| ...	254.0	[0..18]	[232..6]
gi\|49529227 - gi\|49529227\|emb\|CAG62893.1\| unnamed protein product [Candida glabrata] gi\|50295004, gi\|... - gi\|50295004\|ref\|XP_449913.1\| hypothetical protein CAGL0M13101g [Candida glabrata CBS138], gi\|4952922...	253.0	[0..13]	[236..3]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNDYTTSTT TSRRPRFWGF FFILFPLVSF LMWTIGLIVL LGLWSTQDKW HTPSEPDPVY  60
   61 LSDMGAYTKG FFIPMCVITG VFYFLTFIMI RLARQWGWIY PTGRKVETYL GWFAALTGAA 120
  121 AASCLISLSI RDDVHHDNVH WKFTAAFVVL AFVSAASNIF EWL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [164-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SATRYYPQSS LLRVSFIFKF VIIVVGIICA IAFGGLHHNY RGRSARFEWV VCFLWSIYIC  60
   61 LLCLDLAPAL FYDSLASAPD LEK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [247-328]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAYATSVPES YVAPMEPPAA VLPDGEERYA TPDLVPDTTA QYPYASATEP GVSNIPETRP  60
   61 ERPVVYNMDV SQTTTTTRPV LA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.514	a.39.1	EF-hand
View	Download	0.408	a.28.1	ACP-like
View	Download	0.481	a.60.5	Barrier-to-autointegration factor, BAF
View	Download	0.400	a.39.1	EF-hand
View	Download	0.367	a.39.1	EF-hand

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits