YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1795.02c
Organism:	Schizosaccharomyces pombe
Length:	412 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1795.02c.

Description	E-value	Query Range	Subject Range
gi\|46136511, gi\|... - gi\|46136511\|ref\|XP_389947.1\| hypothetical protein FG09771.1 [Gibberella zeae PH-1], gi\|42553297\|gb\|E...	309.0	[0..5]	[406..118]
CAX2_ARATH - Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2	283.0	[0..1]	[410..9]
gi\|111062770 - gi\|111062770\|gb\|EAT83890.1\| hypothetical protein SNOG_08722 [Phaeosphaeria nodorum SN15]	272.0	[0..18]	[411..139]
gi\|49108966, gi\|... - gi\|67901046\|ref\|XP_680779.1\| hypothetical protein AN7510.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	271.0	[0..26]	[410..131]
gi\|4512263 - gi\|4512263\|dbj\|BAA75232.1\| H+/Ca2+ exchanger 2 [Ipomoea nil]	269.0	[0..8]	[410..19]
gi\|83766993 - gi\|83766993\|dbj\|BAE57133.1\| unnamed protein product [Aspergillus oryzae] gi\|169769330 - gi\|169769330\|ref\|XP_001819135.1\| hypothetical protein [Aspergillus oryzae RIB40]	263.0	[0..25]	[408..137]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIERLKIAKN RLEAMNSFNF PAQDRHERAP LLGSEYDHSM ARQLSLLNVV GMTKSVLMSS  60
   61 YFNLMLVFVP IGLIAGWFE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [80-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WNAKSVFILN MLAIIPLASL LSFATEQLSI ISGPTLGALL NASFGNAIEL IVGVLALKRG  60
   61 ELRIVQSSLL GSILSNLLLV FGMCLVTTGI RREITTFNIT VAQTMIAMLA LSTATILIPA 120
  121 TFHYSLPDNA NSENALLHVS RGTAVIVLIV YVLLLVFQLK THKHVCHD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	22.657577
Match:	PF01699.15
Description:	No description for PF01699.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [248-412]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSEVEEETEP RILGLRSSIA MLAIVTVFVS LCADYLVGSI DQLVEEVNIS KTFVGLVILP  60
   61 VVGNAAEHVT AIVVSYRGQM DLALGVAIGS SIQIALFLAP FLVIVGWIIS QPLTLYFESL 120
  121 ETVILFVSVF LVNYLIQDGA THWLEGVQLL ALYAIVVLAF FYYPQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.0
Match:	PF01699.15
Description:	No description for PF01699.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits