YRC Public Data Repository - Protein Structure Prediction

Protein:	pmr1
Organism:	Schizosaccharomyces pombe
Length:	899 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pmr1.

Description	E-value	Query Range	Subject Range
gi\|114558784 - gi\|114558784\|ref\|XP_513679.2\| PREDICTED: hypothetical protein [Pan troglodytes]	734.0	[0..1]	[894..161]
AT1A1_HORSE - Sodium/potassium-transporting ATPase subunit alpha-1 OS=Equus caballus GN=ATP1A1 PE=3 SV=1	729.0	[0..1]	[894..37]
gi\|227450 - gi\|227450\|prf\|\|1704129A Na/K ATPase alpha2	724.0	[0..1]	[894..32]
gi\|225173 - gi\|225173\|prf\|\|1210234A ATPase alpha,Na/K	721.0	[0..1]	[894..37]
AT1A1_BOVIN - Sodium/potassium-transporting ATPase subunit alpha-1 OS=Bos taurus GN=ATP1A1 PE=1 SV=1	721.0	[0..1]	[894..37]
gi\|164382 - gi\|164382\|gb\|AAA31002.1\| Na+, K+-ATPase alpha-subunit precursor [Sus scrofa]	720.0	[0..1]	[894..37]
gi\|40352789, gi\|... - gi\|94733516\|emb\|CAK04071.1\| ATPase, Na+/K+ transporting, alpha 3a polypeptide [Danio rerio], gi\|9473...	719.0	[0..1]	[894..39]
gi\|1364218 - gi\|1364218\|emb\|CAA26582.1\| unnamed protein product [Ovis aries]	719.0	[0..1]	[894..32]

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Predicted Domain #1

Region A:
Residues: [1-899]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVQYDAFSV EQTCADLETD MYNGLSSLQE ITRRNKVHGD NDLKVEDEEN MVVQFLKQFV  60
   61 KDPLILLLFA SSAISVTLGN IDDAISIALA IVIVVTVGFV QEYRSEQSLK ALNNLVPHYC 120
  121 NVIRSGKTEH IVASKLVPGD LVILQIGDRV PADLRIVEAT ELEIDESNLT GENSPRKKSS 180
  181 EAISSNISLT ERNNIAFMGT LVRHGHGRGI VVATGSDTEF GRVFLTMQQT EKPKTPLQNS 240
  241 MDDLGKQLSL ISLIGIAVIV LVGFFQGKNW LEMLTIGVSL AVAAIPEGLP IIVTVTLALG 300
  301 VLRMSKKRAI IRRLPSVETL GSVNVICSDK TGTLTMNHMT VTKIYTCGML AAFSLPESEH 360
  361 IELSVRRTVG IEKALLAAAL CNNSKVHNKA DSILDTTCPW AGFPVDVALI ECSERFGLKD 420
  421 PRETYSRISE VSFSSERKYM SVAVQYNSSK MNFMKGATEQ VLSSCAYFSD QDGVQHELTA 480
  481 EMKENIQRNE FEMAASGLRI IAVASGINTN KLVFHGLFGI NDPPRPQVRE SVQYLMTGGV 540
  541 RVIMITGDSV VTAISIARSL GMAIPSNDEE AIRNYALTGA QLDDLDSSSL RDAVSRVVVF 600
  601 ARTTPQHKMK IVEALQSLGD VVAMTGDGVN DAPALKLADI GIAMGRQGTD VAKEAADMIL 660
  661 TDDSFATILS AVEEGKGIFN NIKNFITFQL STSVAALSLI AISSVFGFQN PLNAMQILWI 720
  721 NILMDGPPAQ SLGVESVDED VMMKPPRPRN APIISVQLLQ RVLLSAFIIV TVTIVVFRVQ 780
  781 MQDGNVTARD TTMTFTCFVF FDMFNALACR SETKSVFKLG IFSNRMFNIA VGGSLIGQAL 840
  841 VVYASPFQRI FQTEAIGLKD VLILLACTSS VLWVDEIRKW YRRRKGLVRT KSNYLLRNV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	177.0
Match:	1iwoA
Description:	Calcium ATPase, transduction domain A; Calcium ATPase, catalytic domain P; Calcium ATPase; Calcium ATPase, transmembrane domain M
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits