YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC83.13
Organism:	Schizosaccharomyces pombe
Length:	293 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC83.13.

Description	E-value	Query Range	Subject Range
gi\|114674911 - gi\|114674911\|ref\|XP_524071.2\| PREDICTED: solute carrier family 25, member 23 [Pan troglodytes]	282.0	[0..2]	[291..357]
gi\|46249805 - gi\|46249805\|gb\|AAH68561.1\| Solute carrier family 25 (mitochondrial carrier; phosphate carrier), memb...	281.0	[0..2]	[291..185]
gi\|109012617 - gi\|109012617\|ref\|XP_001083681.1\| PREDICTED: similar to solute carrier family 25 member 24 isoform 2 ...	280.0	[0..2]	[291..166]
gi\|109465464, gi... - gi\|109467461\|ref\|XP_001072301.1\| PREDICTED: similar to calcium-binding transporter [Rattus norvegicu...	280.0	[0..2]	[291..194]
gi\|50750910 - gi\|50750910\|ref\|XP_422180.1\| PREDICTED: similar to Solute carrier family 25 member 24, isoform 1 [Ga...	279.0	[0..2]	[291..331]
SCM1B_XENLA - Calcium-binding mitochondrial carrier protein SCaMC-1-B OS=Xenopus laevis GN=slc25a24-b PE=2 SV=1	279.0	[0..2]	[291..185]

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Predicted Domain #1

Region A:
Residues: [1-293]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKIEKKQAS ASNLLLGAGL NLFETSSLGQ PLEVTKVQMA ANRTQTMAQA IKAIMSRGGI  60
   61 LGFYQGLIPW AWIEASTKGA VLLFTSAELE YWGRRLGLGA TSAGAIAGMG GGVAQAYATM 120
  121 GFCTCMKTAE VTRAKQAATG QEVKGTFRVF ADLYKEKGIR GINRGVNAVA LRQMTNWGSR 180
  181 LALSRFLEKP IRYFTGRTEA EPLTTGQRFV ASVSAGALSC WNQPLEVARV EMQSLTKGIQ 240
  241 HSSPGIMQTI MSIYKNNGIK GLYRGAVPRM GLGAYQTFVM VFLADCVRGY LAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.522879
Match:	1okcA
Description:	structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits