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View Structure Prediction Details

Protein: SPCC1442.17c
Organism: Schizosaccharomyces pombe
Length: 271 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1442.17c.

Description E-value Query
Range
Subject
Range
gi|28924272, gi|... - gi|32416438|ref|XP_328697.1| hypothetical protein [Neurospora crassa], gi|28924272|gb|EAA33425.1| co...
gi|85108918 - gi|85108918|ref|XP_962661.1| hypothetical protein NCU07991 [Neurospora crassa OR74A]
312.0 [0..1] [258..9]
gi|56784921, gi|... - gi|56784921|dbj|BAD82253.1| MAPK activating protein-like [Oryza sativa Japonica Group], gi|255673607...
290.0 [0..3] [260..20]
gi|110739382 - gi|110739382|dbj|BAF01603.1| hypothetical protein [Arabidopsis thaliana]
282.0 [0..2] [267..12]

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Predicted Domain #1
Region A:
Residues: [1-184]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRLQIQLKL AASRIEILRQ KEEALAKQAR RNVALGLKSY SPALAKARIE PLIMQDIYIE  60
   61 LLELLQVDVE ILANRCVVLE KRAFNDSMSF KSSLYHVMAA APQLQIKELR FVHDFLVKLY 120
  121 GKEFARLSDP DLATNDTAFY QLLYPPIPKD ELVEAYRKEL IRTYFPNDYP KEANKDIPSS 180
  181 AEAD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 61.508638
Match: PF03398.5
Description: No description for PF03398.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [185-271]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TMLNLESSEN REQPTSLKEE NTQEDDEKVN GNLANISKRA EPQNNGSTNA SSLQSSNYLP  60
   61 TNPTLTHSNK APSFEELAAR LDRLKHL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle