YRC Public Data Repository - Protein Structure Prediction

Protein:	mrpl24
Organism:	Schizosaccharomyces pombe
Length:	176 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrpl24.

Description	E-value	Query Range	Subject Range
gi\|109487925, gi... - gi\|109490424\|ref\|XP_001061401.1\| PREDICTED: similar to 39S ribosomal protein L28, mitochondrial prec...	174.0	[0..16]	[174..108]
gi\|66350942 - gi\|66350942\|emb\|CAI95595.1\| mitochondrial ribosomal protein L28 [Homo sapiens]	169.0	[0..16]	[174..65]
gi\|51873998 - gi\|51873998\|gb\|AAH80753.1\| Mrpl28 protein [Mus musculus]	167.0	[0..16]	[174..66]
gi\|109127051, gi... - gi\|109127051\|ref\|XP_001084407.1\| PREDICTED: similar to mitochondrial ribosomal protein L28 isoform 1...	166.0	[0..16]	[174..65]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKLLRKLA YPTLPVKGKI YDPFSKFQQN LYGGSKTEAG NNKIPKFGHK TRRVWIPNGH  60
   61 SKWLYSNVLE EKFHLYVTSR VLRTIDKEGG LDEYLVKSTP SRLKSLGLRG VELRALVLHK 120
  121 LGAKNPILEK LPSDSGAQKR YLEKVKDVVL KLNRSKKLYQ QIKSLVGKER SVNTSV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.30103
Match:	2qamZ
Description:	No description for 2qamZ was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.93798084434094	bayes_pls_golite062009
structural molecule activity	9.3625249805433	bayes_pls_golite062009
binding	0.865205020833206	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: