YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC2E1P3.01
Organism:	Schizosaccharomyces pombe
Length:	348 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC2E1P3.01.

Description	E-value	Query Range	Subject Range
gi\|86134306, gi\|... - gi\|86134306\|ref\|ZP_01052888.1\| zinc-binding dehydrogenase [Polaribacter sp. MED152], gi\|85821169\|gb\|...	274.0	[0..1]	[347..12]
gi\|40795502 - gi\|40795502\|gb\|AAR91477.1\| thermostable alcohol dehydrogenase [Geobacillus sp. M10EXG]	269.0	[0..1]	[348..1]
gi\|75812768, gi\|... - gi\|75812768\|ref\|YP_320385.1\| zinc-containing alcohol dehydrogenase superfamily protein [Anabaena var...	266.0	[0..1]	[344..321]
ADH3_GEOSE - Alcohol dehydrogenase OS=Geobacillus stearothermophilus PE=1 SV=1	265.0	[0..1]	[348..1]
gi\|28872343, gi\|... - gi\|28872343\|ref\|NP_794962.1\| oxidoreductase, zinc-binding [Pseudomonas syringae pv. tomato str. DC30... tr\|Q87UR5\|Q87UR5... - Oxidoreductase, zinc-binding protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_523...	264.0	[0..1]	[345..1]
gi\|47564631, gi\|... - gi\|47564631\|ref\|ZP_00235676.1\| oxidoreductase, zinc-binding [Bacillus cereus G9241], gi\|47558783\|gb\|...	262.0	[0..1]	[347..1]
gi\|2983768, gi\|1... - gi\|2983768\|gb\|AAC07327.1\| alcohol dehydrogenase [Aquifex aeolicus VF5], gi\|15606558\|ref\|NP_213938.1\|... gi\|7427649 - pir\|\|C70418 probable alcohol dehydrogenase (EC 1.1.1.-) - Aquifex aeolicus	262.0	[0..1]	[348..1]
gi\|15234529, gi\|... - pir\|\|T05166 quinone reductase homolog F18E5.200 - Arabidopsis thaliana, gi\|7268955\|emb\|CAB81265.1\| p...	261.0	[0..1]	[344..1]
gi\|71733591, gi\|... - gi\|71733591\|ref\|YP_272602.1\| quinone oxidoreductase [Pseudomonas syringae pv. phaseolicola 1448A], g...	260.0	[0..1]	[345..1]

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Predicted Domain #1

Region A:
Residues: [1-348]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAVIADGQN GVEVISDAPK PTPEKGEFLG RVIRVAFNPI DWKTLYNASI EKGTVGGTDF  60
   61 VAVVEDVGEG VDRSKYIGAT VSGWAPGPLD GSNAAWREYI TLDVNLVYFV PKNITPSQAA 120
  121 TLPLTFTTAS QGLNQYLGLP LPPTDGSKNS AQQKWVLVWS GSSSVGQYVV QLAHHAGYKV 180
  181 IATCSPHNFD WIKKLGADFT VDYHDPNVVE IIKKATDDSV FYGFDAASFP ETSTLAVKAF 240
  241 SSKVKDGKLI NILSSPPSPR SEVKIIGIID YSLFNREFNF FGNKIEPIQA SYDHAVEVYK 300
  301 KLTGWLQEGV IIPNRVKEFD GGLQAIPKAL REFASGKHSA VKFVVRID

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.0
Match:	1rjwA
Description:	CRYSTAL STRUCTURE OF NAD(+)-DEPENDENT ALCOHOL DEHYDROGENASE FROM BACILLUS STEAROTHERMOPHILUS STRAIN LLD-R
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	2.27962497742937	bayes_pls_golite062009
catalytic activity	1.79741889688267	bayes_pls_golite062009
chaperone binding	0.983752799796442	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	0.799708671807187	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	0.653719917678334	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	0.644078151952473	bayes_pls_golite062009
binding	0.429102711245135	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: