YRC Public Data Repository - Protein Structure Prediction

Protein:	emp24
Organism:	Schizosaccharomyces pombe
Length:	199 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for emp24.

Description	E-value	Query Range	Subject Range
gi\|109066641, gi... - gi\|109066643\|ref\|XP_001091631.1\| PREDICTED: similar to transmembrane emp24 protein transport domain ...	227.0	[0..8]	[199..16]
TMED4_MOUSE - Transmembrane emp24 domain-containing protein 4 OS=Mus musculus GN=Tmed4 PE=1 SV=1	225.0	[0..1]	[199..12]
gi\|149047669, gi... - gi\|27697481\|ref\|XP_223611.1\| PREDICTED: similar to transmembrane emp24 protein transport domain cont...	224.0	[0..1]	[199..12]
gi\|47228487 - gi\|47228487\|emb\|CAG05307.1\| unnamed protein product [Tetraodon nigroviridis]	221.0	[0..1]	[195..1]
gi\|41107615, gi\|... - gi\|41107615\|gb\|AAH65441.1\| Transmembrane emp24 domain trafficking protein 2 [Danio rerio], gi\|410546...	221.0	[0..1]	[199..1]
TMED4 - transmembrane emp24 protein transport domain containing 4 gi\|117645226, gi... - gi\|117646248\|emb\|CAL38591.1\| hypothetical protein [synthetic construct], gi\|117645226\|emb\|CAL38079.1...	219.0	[0..15]	[199..23]
gi\|114613157 - gi\|114613157\|ref\|XP_001145929.1\| PREDICTED: transmembrane emp24 protein transport domain containing ...	219.0	[0..15]	[199..23]
gi\|89273430, gi\|... - gi\|89273430\|emb\|CAJ82650.1\| transmembrane emp24 domain trafficking protein 2 [Xenopus tropicalis], g...	219.0	[0..1]	[199..1]

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Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFFNVFKAV LCAYFISVVF GHGITLKPHQ RECFYENLRN NDQMSVTYQT NVGGDQLVSM  60
   61 SIYNPAGQIM HQEVPNSMAQ YSFTVKNPGK YMYCFYNDAL DGESKEVLFN VHGVIYISDE 120
  121 DLDANNPLLG KVRQLHDTIS KVKHEQEYFV ARERIHRNTA ESTNDRVKWW SILQTVILVS 180
  181 VCVFQIFYLK RLFEVKRVV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.966
Match:	2yrlA
Description:	No description for 2yrlA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits