YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC285.04
Organism:	Schizosaccharomyces pombe
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC285.04.

Description	E-value	Query Range	Subject Range
HIUH_PSEAE, YF18... - (Q9I3J5) Hypothetical transthyretin-like protein PA1518, Putative transthyretin-like protein PA1518 ... gi\|126193245, gi... - gi\|254239867\|ref\|ZP_04933189.1\| conserved hypothetical protein [Pseudomonas aeruginosa 2192], gi\|194... gi\|218772834, gi... - gi\|218892606\|ref\|YP_002441475.1\| putative transthyretin family protein [Pseudomonas aeruginosa LESB5... HIUH_PSEAE - 5-hydroxyisourate hydrolase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG...	164.0	[0..2]	[124..3]
gi\|49077538 - gi\|49077538\|gb\|AAT49690.1\| PA1518 [synthetic construct]	163.0	[0..2]	[124..3]
gi\|194545599, gi... - gi\|254234614\|ref\|ZP_04927937.1\| conserved hypothetical protein [Pseudomonas aeruginosa C3719], gi\|19... gi\|116049462, gi... - gi\|116049462\|ref\|YP_791735.1\| putative transthyretin family protein [Pseudomonas aeruginosa UCBPP-PA...	162.0	[0..2]	[124..3]
gi\|109463139, gi... - gi\|109463139\|ref\|XP_001057865.1\| PREDICTED: similar to Hypothetical transthyretin-like protein R09H1...	161.0	[0..2]	[124..11]
gi\|73956886 - gi\|73956886\|ref\|XP_546767.2\| PREDICTED: similar to Epithelial-cadherin precursor (E-cadherin) (Uvomo...	159.0	[0..4]	[124..632]
gi\|115955498, gi... - gi\|72156901\|ref\|XP_793771.1\| PREDICTED: similar to HIU hydrolase [Strongylocentrotus purpuratus], gi...	159.0	[0..5]	[124..31]
gi\|94415074 - gi\|94415074\|ref\|ZP_01294923.1\| hypothetical protein PaerP_01003182 [Pseudomonas aeruginosa PA7]	159.0	[0..10]	[124..1]
gi\|107100949 - gi\|107100949\|ref\|ZP_01364867.1\| hypothetical protein PaerPA_01001979 [Pseudomonas aeruginosa PACS2] gi\|84328432 - gi\|84328432\|ref\|ZP_00976439.1\| COG2351: Transthyretin-like protein [Pseudomonas aeruginosa 2192]	159.0	[0..10]	[124..1]
gi\|68346014, gi\|... - gi\|70731715\|ref\|YP_261457.1\| transthyretin family protein [Pseudomonas fluorescens Pf-5], gi\|6834601...	157.0	[0..10]	[124..1]
gi\|63255761, gi\|... - gi\|66045054\|ref\|YP_234895.1\| transthyretin [Pseudomonas syringae pv. syringae B728a], gi\|63255761\|gb...	157.0	[0..10]	[124..1]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNPPQPQG PALTAHILNT MSGIPAAGVQ VALFKLNESP TPSQQFIATT ETNANGRVTS  60
   61 WNVDLSTVES GIYTFRFETG AYFDSLGVTS FYPYVEMAVR INKGQHYHIP LLLAPYGYTT 120
  121 YRGS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.221849
Match:	2iglA
Description:	No description for 2iglA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits