YRC Public Data Repository - Protein Structure Prediction

Protein:	gtr2
Organism:	Schizosaccharomyces pombe
Length:	314 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gtr2.

Description	E-value	Query Range	Subject Range
gi\|50744702 - gi\|50744702\|ref\|XP_419838.1\| PREDICTED: similar to Ras-related GTP binding D; Rag D protein [Gallus ...	289.0	[0..3]	[313..691]
gi\|114555754 - gi\|114555754\|ref\|XP_513334.2\| PREDICTED: Ras-related GTP binding C [Pan troglodytes]	274.0	[0..3]	[312..119]
gi\|109072056 - gi\|109072056\|ref\|XP_001091094.1\| PREDICTED: similar to Ras-related GTP binding D [Macaca mulatta]	274.0	[0..3]	[313..99]
RRAGD_MOUSE - Ras-related GTP-binding protein D OS=Mus musculus GN=Rragd PE=2 SV=2	271.0	[0..3]	[313..111]
gi\|73973907 - gi\|73973907\|ref\|XP_532231.2\| PREDICTED: similar to Ras-related GTP binding D [Canis familiaris]	269.0	[0..3]	[313..77]
gi\|76625952 - gi\|76625952\|ref\|XP_614574.2\| PREDICTED: similar to Ras-related GTP binding D isoform 1 [Bos taurus]	264.0	[0..3]	[313..59]
RRAGD - Ras-related GTP binding D gi\|114608466 - gi\|114608466\|ref\|XP_001158292.1\| PREDICTED: Ras-related GTP binding D isoform 3 [Pan troglodytes]	264.0	[0..3]	[313..62]
gi\|157820377, gi... - gi\|187469778\|gb\|AAI67014.1\| Ras-related GTP binding D [Rattus norvegicus], gi\|157820377\|ref\|NP_00110...	263.0	[0..3]	[313..61]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPRKIILMG LRRSGKSSIQ KVVFYKMPPN ETLFLESTSK LTQDHISSFI DFSVWDFPGQ  60
   61 VDVFDAAFDF ESIFTQVGAL IFVIDAQDDY LDALARLHVT VARVVTINPN ICIEVFIHKV 120
  121 DGLSDEFKID TQRDIQQRTQ DELADIGLEN VPISFHLTSI FDHSIFEAFS RVIQKLI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.0
Match:	2q3fA
Description:	No description for 2q3fA was found.

Predicted Domain #2

Region A:
Residues: [178-314]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQLPTLENLL NIFCSNSLVE KAYLFDVLSK IYVATDSSPV DVQSYEICSD FIDVILDIGS  60
   61 IYGRSSQLKP GHSPEILDET SSVIRLSNDL VLFLREMNQY LALICIVRAD NFEKSGLIEY 120
  121 NVQCLQTAIQ SIFSPRT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	31.075721
Match:	PF04670.3
Description:	No description for PF04670.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.754	N/A	N/A	d.162.1	LDH C-terminal domain-like
View	Download	0.695	N/A	N/A	d.110.4	SNARE-like
View	Download	0.658	N/A	N/A	a.25.1	Ferritin-like
View	Download	0.640	N/A	N/A	a.25.1	Ferritin-like
View	Download	0.630	N/A	N/A	a.25.1	Ferritin-like
View	Download	0.614	N/A	N/A	a.29.13	Description not found.
View	Download	0.588	N/A	N/A	d.110.4	SNARE-like
View	Download	0.548	N/A	N/A	d.162.1	LDH C-terminal domain-like
View	Download	0.538	N/A	N/A	d.19.1	MHC antigen-recognition domain
View	Download	0.532	N/A	N/A	d.162.1	LDH C-terminal domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits