YRC Public Data Repository - Protein Structure Prediction

Protein:	amt2
Organism:	Schizosaccharomyces pombe
Length:	512 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for amt2.

Description	E-value	Query Range	Subject Range
gi\|67900952, gi\|... - gi\|67900952\|ref\|XP_680732.1\| hypothetical protein AN7463.2 [Aspergillus nidulans FGSC A4], ref\|XP_41... gi\|18693013 - gi\|18693013\|gb\|AAL73117.1\| ammonium transporter MEAA [Emericella nidulans]	447.0	[0..4]	[471..1]
gi\|66847348, gi\|... - gi\|70989735\|ref\|XP_749717.1\| ammonium transporter MeaA [Aspergillus fumigatus Af293], gi\|66847348\|gb...	447.0	[0..15]	[471..20]
gi\|38101985, gi\|... - gi\|39974633\|ref\|XP_368707.1\| hypothetical protein MGG_00537 [Magnaporthe grisea 70-15], gb\|EAA48879....	445.0	[0..27]	[471..17]
gi\|90306017, gi\|... - gi\|90306017\|gb\|EAS35648.1\| hypothetical protein CIMG_01002 [Coccidioides immitis RS], gi\|119193250\|r...	443.0	[0..8]	[471..1]
gi\|46107292, gi\|... - gi\|46107292\|ref\|XP_380705.1\| hypothetical protein FG00529.1 [Gibberella zeae PH-1], gi\|42545722\|gb\|E...	439.0	[0..28]	[480..18]
gi\|85112788 - gi\|85112788\|ref\|XP_964410.1\| ammonium transporter MEP1 [Neurospora crassa OR74A] gi\|28926191, gi\|... - gi\|32420499\|ref\|XP_330693.1\| hypothetical protein [Neurospora crassa], gi\|28926191\|gb\|EAA35174.1\| am...	438.0	[0..19]	[471..8]
gi\|17221150 - gi\|17221150\|gb\|AAL11032.1\| high affinity ammonium transporter [Tuber borchii]	438.0	[0..28]	[494..20]
gi\|83767057 - gi\|83767057\|dbj\|BAE57197.1\| unnamed protein product [Aspergillus oryzae] gi\|169769458 - gi\|169769458\|ref\|XP_001819199.1\| hypothetical protein [Aspergillus oryzae RIB40]	432.0	[0..24]	[471..27]

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Predicted Domain #1

Region A:
Residues: [1-512]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSVNSIPTA TSTVYISVLP ATATPSGGSG GNVLHEDLNK FYDYGNTSWI LACTPLCLIM  60
   61 VPGVAFFYSG LARRKNTLAL IMLSMLGLCV SFFQWYFWGY SLAFSQTGTS GYIGNLRHFA 120
  121 FIRTLADYSP GSNNIPELVF ANFQGMFAAI TVALFTGAAA ERGRIGPMLI ITFVWLTVVY 180
  181 CPIACWIWNP NGWAFKFGVY DFAGGGPVEV GSGFAALAYT VCLGRRSKFV EEQFRPHSVL 240
  241 NVVLGTSLLW FGWLGFNGGS AYGSNLRAAM AITNTNLAGA VAGLVWVIYD YIFRTRKWST 300
  301 IGFCSGVVAG LVAATPCAGF VSPHASLAIG AITGLCCNWA IKLKSHMRID DAMDIFAIHG 360
  361 VAGFVGTFLN GLFAVDYIAA MDGIYVGENK IRGGWFDHHW RQLGLQMAYI CAVGAYDFVV 420
  421 TFIILFITDK IPYLQLRVSP DAEEIGVDAD QIGEYAFDYI EERREYKHWK ISPAGVPEEI 480
  481 IISNGVAQPT GNVAAPGKIL ESTNPLELGL TI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.0
Match:	2b2fA
Description:	Ammonium Transporter Amt-1 from A.fulgidus (Native)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits