YRC Public Data Repository - Protein Structure Prediction

Protein:	jmj1
Organism:	Schizosaccharomyces pombe
Length:	464 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for jmj1.

Description	E-value	Query Range	Subject Range
JMJD4 - jumonji domain containing 4	274.0	[0..37]	[407..37]
gi\|114572991 - gi\|114572991\|ref\|XP_001143331.1\| PREDICTED: jumonji domain containing 4 isoform 2 [Pan troglodytes]	270.0	[0..37]	[407..37]
gi\|109017986 - gi\|109017986\|ref\|XP_001086580.1\| PREDICTED: similar to jumonji domain containing 4 isoform 2 [Macaca...	266.0	[0..47]	[407..45]
gi\|149052799, gi... - gi\|157786610\|ref\|NP_001099254.1\| jumonji domain containing 4 [Rattus norvegicus], gi\|149052799\|gb\|ED...	257.0	[0..77]	[412..31]
gi\|76685474 - gi\|76685474\|ref\|XP_582558.2\| PREDICTED: similar to jumonji domain containing 4 isoform 1 [Bos taurus...	252.0	[0..64]	[404..20]
JMJD4_MOUSE - JmjC domain-containing protein 4 OS=Mus musculus GN=Jmjd4 PE=2 SV=1	251.0	[0..79]	[412..34]

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Predicted Domain #1

Region A:
Residues: [1-368]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVYRPTAHEF DDLPKIEFID SCPYQVFLEQ YLKPCVPVLI GPKLTAQWKA NTTWITSKGD  60
   61 PNILHSYILP DKPCTSRDNT SGNSLLNDND IKNFIRSYAE RIVNNEDKNV FLDSLLLSPN 120
  121 YEYLEENYGT IPVPLAYCNE KDRYGSQRRE TVPLKSALHE LRDEQVQLQC RQAPSNQALK 180
  181 SLYAKDMHLF RHLDPADFPY STPDIFADDW LNAYVIDCES DDFRFAYLGS HLTTTGLHTD 240
  241 VYASHSFSVN LCGVKCWLFI DPKDLQTIAS LYDDQQLPSW ITKDDLFRGP LVNHRHLIKI 300
  301 LFQYPGQTVF VPSGWYHQVL NIGTTLSINH NWCNASCILQ MYTALKEQYE VSAESLKDLL 360
  361 EDGIVTKD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.522879
Match:	2yu1A
Description:	No description for 2yu1A was found.

Predicted Domain #2

Region A:
Residues: [369-464]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RFSQVVTEVV EANYGWCWRR FWGMIKHQLK RRDAILHSSE YFSKWPIQPE FLPPLSWEYS  60
   61 ILKNILLNDE PGSTFDSGSP PSSIVTIFKS LGDFKE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.546	a.1.1	Globin-like
View	Download	0.557	a.118.9	ENTH/VHS domain
View	Download	0.538	a.1.1	Globin-like
View	Download	0.490	a.1.1	Globin-like
View	Download	0.477	a.1.1	Globin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits