YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC15C4.04c
Organism:	Schizosaccharomyces pombe
Length:	542 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC15C4.04c.

Description	E-value	Query Range	Subject Range
gi\|42548077, gi\|... - gi\|46115934\|ref\|XP_383985.1\| hypothetical protein FG03809.1 [Gibberella zeae PH-1], gi\|42548077\|gb\|E...	278.0	[0..4]	[542..1033]
orf19.3195 - HIP1 CGDID:CAL0002448 Assembly 19, Contig19-10170 (67622, 69421) CDS, translated using codon table 1... gi\|46436194, gi\|... - gi\|68482961\|ref\|XP_714611.1\| potential general amino acid permease [Candida albicans SC5314], gi\|464...	277.0	[0..34]	[538..66]
gi\|238482071, gi... - gi\|238482071\|ref\|XP_002372274.1\| amino acid permease (Gap1), putative [Aspergillus flavus NRRL3357],... gi\|169765514 - gi\|169765514\|ref\|XP_001817228.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765083 - gi\|83765083\|dbj\|BAE55226.1\| unnamed protein product [Aspergillus oryzae]	275.0	[0..33]	[537..54]
gi\|39943728, gi\|... - gi\|39943728\|ref\|XP_361401.1\| hypothetical protein MG03875.4 [Magnaporthe grisea 70-15], gb\|EAA50116....	273.0	[0..26]	[529..13]
LYP1_YEAST - Lysine-specific permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LYP1 PE=1 SV=2 LYP1 - Lysine permease; one of three amino acid permeases (Alp1p, Can1p, Lyp1p) responsible for uptake of c... gi\|190409237 - gi\|190409237\|gb\|EDV12502.1\| lysine permease [Saccharomyces cerevisiae RM11-1a]	273.0	[0..5]	[538..53]
gi\|68373624 - gi\|68373624\|ref\|XP_692242.1\| PREDICTED: similar to Cationic amino acid transporter 3 (CAT-3) (Solute...	272.0	[0..54]	[460..970]

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Predicted Domain #1

Region A:
Residues: [1-60]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSVSNVSVN EQGKFNDKEE GFSNLKSLKH VSHSETDFEV SNDEDNQLLE LGYKPVFKRE  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.959
Match:	1qd7B
Description:	30S subunit
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [61-457]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSTWATFSFA FSISGLFATV VTTYSYPLIS GGAPSAVWCW LIAGAGCMCI ALSVAELVSA  60
   61 YPTSGGLYFT CKDLVPARSM PVVAWVVGWL NLLGQAAGVS STDWSCAQLL LAAVSISTDL 120
  121 KYIPTNQHIV GVMAAVIVFH GLVNSLSTRW LDRITRFYAT FHLIVLVVCM ICLLAKCPKF 180
  181 NTGKYVFTDV QASSGWHPIG FSFLFGFLSV AWCMTDYDAT AHIAEEIENA AVRAPNAIAL 240
  241 ALSITYVLGW VFNIVLAFTM GTDLDSLINS ELGQPVAQIF YNVLGKKGSM AFTILSFIII 300
  301 NFTGITAMQA NARTIWAFSR DQALPFSRYW YKINKTTTTP VIAVWLNVVF CIALNLIGLG 360
  361 SIEAIEAIFS VCAIALDWSY VIPIACKLIF GKRLNYK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.22
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [458-542]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGPWNLGWAS HFVNAYAVCW TAFVSVIFLM PTVRPVTPQN MNYAVVVLAG VLLFSLVYWW  60
   61 SGARKSYIGP RINVDMESED PFKTE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits