YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC806.04c
Organism:	Schizosaccharomyces pombe
Length:	440 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC806.04c.

Description	E-value	Query Range	Subject Range
ART1B_SCHPO - Protein-glutamate O-methyltransferase C1393.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843... SPCC1393.13 - DUF89 family protein	596.0	[0..1]	[439..3]
C6orf211 - chromosome 6 open reading frame 211	547.0	[0..8]	[436..4]
gi\|32416084, gi\|... - gi\|32416084\|ref\|XP_328520.1\| hypothetical protein [Neurospora crassa], gi\|28919176\|gb\|EAA28668.1\| hy... gi\|85089202 - gi\|85089202\|ref\|XP_957904.1\| hypothetical protein NCU07814 [Neurospora crassa OR74A]	545.0	[0..1]	[436..1]
gi\|73946140 - gi\|73946140\|ref\|XP_854799.1\| PREDICTED: similar to F31D4.2 [Canis familiaris]	545.0	[0..11]	[436..8]
gi\|55627584 - gi\|55627584\|ref\|XP_518812.1\| PREDICTED: hypothetical protein [Pan troglodytes]	543.0	[0..8]	[436..4]
ARMT1_MACFA - Protein-glutamate O-methyltransferase OS=Macaca fascicularis GN=ARMT1 PE=2 SV=2	541.0	[0..8]	[436..4]
gi\|109072328 - gi\|109072328\|ref\|XP_001097936.1\| PREDICTED: similar to F31D4.2 isoform 2 [Macaca mulatta]	539.0	[0..8]	[436..4]
gi\|58381739, gi\|... - gi\|58381739\|ref\|XP_311438.2\| ENSANGP00000000582 [Anopheles gambiae str. PEST], gi\|55242935\|gb\|EAA070...	537.0	[0..4]	[436..20]
gi\|42546739, gi\|... - gi\|46110357\|ref\|XP_382236.1\| hypothetical protein FG02060.1 [Gibberella zeae PH-1], gi\|42546739\|gb\|E...	535.0	[0..9]	[434..8]
ARMT1_MOUSE - Protein-glutamate O-methyltransferase OS=Mus musculus GN=Armt1 PE=1 SV=1	535.0	[0..9]	[436..5]

Back

Predicted Domain #1

Region A:
Residues: [1-440]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFLNPPFPY SMTSDPESFG HECFTRRWGI ILTGIEKDVS ERLSKLASTS KDSEVVAQGK  60
   61 PLLNDLEAFK SDIKNDRPLV PLEGEGQDIV EYNEELKQLD NASWGNAPWL YSECYYYRRI 120
  121 SLIFARYSEW KAYDPFFQQK DSTLKSSRAA VEELAGRYCL LEEELNSIAK KGDSHIAYMV 180
  181 FVEMAQISLW GNATDLSLLT NLSYEELQNL QGQKVVEESQ KNILVNDFPT VWSKLKDVHN 240
  241 GRIDFVLDNA GFELYVDLIF AAYLLKAGIA KEIVLHPKDF PWFVSDVLPY DIEYLLTNLD 300
  301 TIFPTESVTK FATDLRSFSA KGQLRLRTDP FWTTAHYFGR MPDFAAGLLT ELEKSDMIFF 360
  361 KGKNILLYLK LTGDCLWPRT TPFGKTLGPI ANAINACALR TCKADVVVGL PDGLYEKIAK 420
  421 DLPHWERTGK YAVVEFCPKA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.96
Match:	1xfiA
Description:	X-ray structure of gene product from Arabidopsis thaliana At2g17340
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits