YRC Public Data Repository - Protein Structure Prediction

Protein:	coq9
Organism:	Schizosaccharomyces pombe
Length:	250 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for coq9.

Description	E-value	Query Range	Subject Range
gi\|46136647, gi\|... - gi\|46136647\|ref\|XP_390015.1\| hypothetical protein FG09839.1 [Gibberella zeae PH-1], gi\|42554858\|gb\|E...	275.0	[0..31]	[250..26]
AGAP004842-PB - ubiquinone biosynthesis protein COQ9, mitochondrial\|protein_coding\|2L:4388695:4392236:1\|gene:AGAP004... gi\|158293065, gi... - gi\|58385978\|ref\|XP_314349.2\| ENSANGP00000025105 [Anopheles gambiae str. PEST], gi\|55240296\|gb\|EAA444...	268.0	[0..33]	[246..95]
gi\|21593282 - gi\|21593282\|gb\|AAM65231.1\| unknown [Arabidopsis thaliana]	266.0	[0..35]	[250..79]
gi\|51259441, gi\|... - gi\|75775127\|gb\|AAI04703.1\| Coq9 protein [Rattus norvegicus], gi\|51259441\|gb\|AAH79370.1\| Coq9 protein...	264.0	[0..46]	[241..90]
gi\|85093576 - gi\|85093576\|ref\|XP_959723.1\| hypothetical protein NCU02403 [Neurospora crassa OR74A] gi\|32421471, gi\|... - gi\|32421471\|ref\|XP_331179.1\| hypothetical protein [Neurospora crassa], gi\|28921173\|gb\|EAA30487.1\| co...	264.0	[0..31]	[250..79]
COQ9_MOUSE - Ubiquinone biosynthesis protein COQ9, mitochondrial OS=Mus musculus GN=Coq9 PE=1 SV=1	263.0	[0..46]	[241..93]

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Predicted Domain #1

Region A:
Residues: [1-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTLRSACQL TTKNLGLHKC ISKTVISALG RRGYHSENYE TSKISGKKAL ILENALEHVP  60
   61 QLGFTEDAIV QGGQALGYSN LSKALFPSGP MDLISYFFLK QRYALSSLKP HLTTIPETSG 120
  121 RVVQLIWSRL QGNRDIVQHL PQMIAICTYP SNLRKSLSSL AELSDEILYL AQDKSADFQW 180
  181 YTKRAAISAI YSASELFMSR DTSPNFEATY NFVQHRIQHA KALNDLRNDV LEWGSFQLNA 240
  241 VRSILRSRGI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.522879
Match:	2oflA
Description:	No description for 2oflA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits