YRC Public Data Repository - Protein Structure Prediction

Protein:	ptp4
Organism:	Schizosaccharomyces pombe
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ptp4.

Description	E-value	Query Range	Subject Range
gi\|46138765, gi\|... - gi\|46138765\|ref\|XP_391073.1\| hypothetical protein FG10897.1 [Gibberella zeae PH-1], gi\|42551661\|gb\|E...	211.0	[0..7]	[218..365]
gi\|39968647, gi\|... - gi\|39968647\|ref\|XP_365714.1\| hypothetical protein MG02416.4 [Magnaporthe grisea 70-15], gb\|EAA54431....	194.0	[0..7]	[218..257]
gi\|85082020 - gi\|85082020\|ref\|XP_956828.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28917907, gi\|... - gi\|32404052\|ref\|XP_322639.1\| hypothetical protein [Neurospora crassa], gi\|28917907\|gb\|EAA27592.1\| hy...	191.0	[0..7]	[218..353]
gi\|88179417, gi\|... - gi\|88179417\|gb\|EAQ86885.1\| hypothetical protein CHGG_08138 [Chaetomium globosum CBS 148.51], gi\|1161...	190.0	[0..6]	[218..152]
orf19.9593, orf1... - orf19.2045 CGDID:CAL0004414 Assembly 19, Contig19-10139 (100984, 102021) CDS, translated using codon... gi\|68472601, gi\|... - gi\|68472858\|ref\|XP_719494.1\| hypothetical protein CaO19.2045 [Candida albicans SC5314], gi\|68472601\|...	189.0	[0..5]	[218..118]
gi\|83770788 - gi\|83770788\|dbj\|BAE60921.1\| unnamed protein product [Aspergillus oryzae] gi\|169763720 - gi\|169763720\|ref\|XP_001727760.1\| hypothetical protein [Aspergillus oryzae RIB40]	187.0	[0..6]	[218..135]
gi\|28881157 - gi\|28881157\|emb\|CAD70327.1\| conserved hypothetical protein [Neurospora crassa] gi\|157071715, gi... - gi\|164427372\|ref\|XP_956828.2\| hypothetical protein NCU03381 [Neurospora crassa OR74A], gi\|157071715\|...	186.0	[0..7]	[218..155]
gi\|111065179 - gi\|111065179\|gb\|EAT86299.1\| hypothetical protein SNOG_06468 [Phaeosphaeria nodorum SN15]	186.0	[0..7]	[218..139]
gi\|67525439, gi\|... - gi\|67525439\|ref\|XP_660781.1\| hypothetical protein AN3177.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	183.0	[0..6]	[218..127]
DGK1_ASHGO - CTP-dependent diacylglycerol kinase 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923... DGK1_ASHGO, HSD1... - Protein HSD1 OS=Ashbya gossypii GN=HSD1 PE=3 SV=1, CTP-dependent diacylglycerol kinase 1 OS=Ashbya g...	182.0	[0..7]	[218..92]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKLTWSQW SKKHEIPRKA LHTSIGFFAL LLQGCGYHAA QIIPVIEIGF IPAFTGDVIR  60
   61 FNWPAFSRLY NRVIGPLMRE SEKNAWNGVI FYMIGVWIVL KVFPEEIAVM SVLLLSWCDT 120
  121 TASTVGRKWG KYTPKIAKNK SLAGSLGAFV CGVFCCYVYW GLFRTGPDSL AAQSRIPFPW 180
  181 LCLINGFIGA FAEAMDVWGL DDNLVIPVVS ACLLYLIM

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	44.920819
Match:	PF01148.11
Description:	No description for PF01148.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits