YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC328.08c
Organism:	Schizosaccharomyces pombe
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC328.08c.

Description	E-value	Query Range	Subject Range
TBCC_MOUSE - Tubulin-specific chaperone C OS=Mus musculus GN=Tbcc PE=1 SV=1	260.0	[0..21]	[253..70]
gi\|157816975, gi... - gi\|27682039\|ref\|XP_236922.1\| PREDICTED: similar to beta-tubulin cofactor C [Rattus norvegicus], gi\|1...	255.0	[0..24]	[253..73]
gi\|40804635 - gi\|40804635\|emb\|CAF05895.1\| related to tubulin folding cofactor C [Neurospora crassa] gi\|164426972, gi... - gi\|164426972\|ref\|XP_959898.2\| hypothetical protein NCU02254 [Neurospora crassa OR74A], gi\|157071551\|...	251.0	[0..7]	[257..21]
TBCC_BOVIN - Tubulin-specific chaperone C OS=Bos taurus GN=TBCC PE=2 SV=1	240.0	[0..3]	[253..50]
gi\|109071173 - gi\|109071173\|ref\|XP_001088723.1\| PREDICTED: similar to beta-tubulin cofactor C [Macaca mulatta]	236.0	[0..18]	[253..68]
gi\|55244092, gi\|... - gi\|58379977\|ref\|XP_310206.2\| ENSANGP00000011106 [Anopheles gambiae str. PEST], gi\|55244092\|gb\|EAA058...	233.0	[0..2]	[254..41]
gi\|73972956 - gi\|73972956\|ref\|XP_538923.2\| PREDICTED: similar to beta-tubulin cofactor C [Canis familiaris]	233.0	[0..21]	[253..113]
gi\|220946104, gi... - gi\|220955772\|gb\|ACL90429.1\| CG31961-PA [synthetic construct], gi\|220946104\|gb\|ACL85595.1\| CG31961-PA... CG31961-PA, CG31... - This gene is referred to in FlyBase by the symbol Dmel\CG31961 (CG31961, FBgn0051961). It is a prote...	233.0	[0..3]	[258..49]
gi\|145018152, gi... - gi\|39973909\|ref\|XP_368345.1\| hypothetical protein MGG_00899 [Magnaporthe grisea 70-15], gb\|EAA49241....	232.0	[0..12]	[259..10]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKFVELRK EFLTKLYKST PSEQTSRSEK ETWLEEKSKY LGEMTRELNE VQDQIAPYDR  60
   61 RVCMEQLVDL TRRLQQIRHD IL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.980	0.013	tubulin complex assembly	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore

Predicted Domain #2

Region A:
Residues: [83-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRQPFRFQRA LHVKSSQKPV KNITVNAEAP EVYFENDTLY LANLKNQNIG DNVIPYPNNK  60
   61 AVKVSAKSLR SCNISISNCS SVNLHNATKC NFTFPTIQGS IHLSDINDST ICVSCHQFRL 120
  121 HHSTNLRVHL RCKTSPVIEE SKEISFSYKD EHPILDFTWA RSDPSPHFRI TSDLFDA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.09691
Match:	2bx6A
Description:	Crystal Structure of the human Retinitis Pigmentosa protein 2 (RP2)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits