YRC Public Data Repository - Protein Structure Prediction

Protein:	ppk29
Organism:	Schizosaccharomyces pombe
Length:	872 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ppk29.

Description	E-value	Query Range	Subject Range
gi\|60649736, gi\|... - gi\|71896311\|ref\|NP_001025540.1\| MAP/microtubule affinity-regulating kinase 2 [Xenopus (Silurana) tro...	333.0	[0..2]	[676..35]
gi\|27923329, gi\|... - gi\|27923329\|gb\|AAO27568.1\|AF509738_1 Ser/Thr protein kinase PAR-1B alpha [Xenopus laevis], gi\|147899...	328.0	[0..2]	[673..35]
gi\|73983768 - gi\|73983768\|ref\|XP_540890.2\| PREDICTED: similar to Serine/threonine-protein kinase MARK2 (MAP/microt...	326.0	[0..2]	[676..50]
gi\|9845487, gi\|1... - ref\|NP_059672.1\| MAP/microtubule affinity-regulating kinase 2 isoform a [Homo sapiens], gi\|1749794\|...	325.0	[0..6]	[676..1]
gi\|114654995 - gi\|114654995\|ref\|XP_001138412.1\| PREDICTED: MAP/microtubule affinity-regulating kinase 3 isoform 13 ...	325.0	[0..2]	[676..21]
gi\|74196782, gi\|... - gi\|74196782\|dbj\|BAE43121.1\| unnamed protein product [Mus musculus], gi\|122937357\|ref\|NP_001073859.1\|...	322.0	[0..6]	[676..1]

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Predicted Domain #1

Region A:
Residues: [1-360]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVASFLTGE KLLAGSKFVI GKYNVTIEKY IAEGGFSHVY LVQTNSKTDG SPITAVLKRM  60
   61 YSPDENALRF VKTEIETMEL LKSNPHVVSY IDSCIFPLEK AGVNTGFEIL LLMEYCAGGG 120
  121 LIDFMNQRLQ TRLSEHEVLK IISDIVQGVA SLHYLRPPLI HRDLKVENVL LSFNTFKLCD 180
  181 FGSVTEPMHA AENSSEIQAL EKSINTFTTY QYRAPEMINL YSGLGIDEKS DMWALGVLLY 240
  241 KLCYYTTPFE TQGPNAILTA SYSFPPFPPY SHSLKNVIIA LLQPNPCLRP NIFQLMCEIC 300
  301 RLRGTALPFR DIYSGRESSF YDLHNRKIMS LLRQTTTTPF AGNQVMPTPQ VQGSRPPPPP 360
  361

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.0
Match:	2qnjA
Description:	No description for 2qnjA was found.

Predicted Domain #2

Region A:
Residues: [361-583]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PMPAPIYNVP NVPTVPTVSP NPFLQPTFSG TSQASAHPSI HSQSATFNNT QDVNRQSVSS  60
   61 PKVVSSSSVT GSGASGRKVY TPQSKNPFPI SQGVTGTSSK FSASEVTEDN GSPNAGLDAD 120
  121 NVDVEEVVNQ RYPDLNELES QLTSHTNITT SSHHNPREQE IAKLADDAFA SFRQTAGTST 180
  181 ANSTHTTGTQ DISAFDTNFS EGVGSVRSSF DFPDRPVSRR PSS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [584-872]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSRSSVKITG PSSPNARSMA YEQHSFNLDD LSNTNFGSNN SLRHAKSFSK YYSPSHKDSN  60
   61 KTSRNTSKEG LPSSPTMLYR TTSNTRGDYI VQRTQQSANP LTNIEPQDMS NLSTDINASD 120
  121 VVADSTNSIL YPTSTASSVA NTIASDVDDF GTFNGLQRTV SLHSERASLD KKRPSFHDKN 180
  181 PYFKFSPSKY VDEGLEGESE LRERVRSYAN RSSSSFHNPD LTDTEIQETS FNNDLRPVAS 240
  241 IQSAETSRSV SDRPANFPEE LNDTLFEQKY PGIVDYEEPN SNAEKNVNI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits