YRC Public Data Repository - Protein Structure Prediction

Protein:	mrpl4
Organism:	Schizosaccharomyces pombe
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrpl4.

Description	E-value	Query Range	Subject Range
gi\|85105905 - gi\|85105905\|ref\|XP_962058.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32408325, gi\|... - gi\|32408325\|ref\|XP_324644.1\| hypothetical protein [Neurospora crassa], gi\|28923652\|gb\|EAA32822.1\| hy...	172.0	[0..22]	[140..75]
RM04_MAGGR - 54S ribosomal protein L4, mitochondrial OS=Magnaporthe grisea GN=MRPL4 PE=3 SV=1 RM04_MAGO7 - 54S ribosomal protein L4, mitochondrial OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8...	168.0	[0..32]	[140..114]
gi\|44983710, gi\|... - gi\|45190731\|ref\|NP_984985.1\| AER126Wp [Ashbya gossypii ATCC 10895], gi\|44983710\|gb\|AAS52809.1\| AER12... gi\|44983710 - gi\|44983710\|gb\|AAS52809.1\| AER126Wp [Ashbya gossypii ATCC 10895]	167.0	[0..22]	[134..80]
gi\|190405475 - gi\|190405475\|gb\|EDV08742.1\| 60S ribosomal protein L4, mitochondrial precursor [Saccharomyces cerevis... gi\|459259 - gi\|459259\|emb\|CAA83057.1\| mitochondrial ribosomal protein [Saccharomyces cerevisiae]	166.0	[0..22]	[137..52]
RM04_EMENI - 54S ribosomal protein L4, mitochondrial OS=Emericella nidulans GN=mrpl4 PE=3 SV=1 RM04_EMENI - 54S ribosomal protein L4, mitochondrial OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 11...	163.0	[0..21]	[140..80]
RM04_ASPTN - 54S ribosomal protein L4, mitochondrial OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=mrp...	159.0	[0..21]	[139..80]
RM04_CHAGB - 54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM ... RM04_CHAGB - 54S ribosomal protein L4, mitochondrial OS=Chaetomium globosum GN=MRPL4 PE=3 SV=1	157.0	[0..22]	[140..82]
gi\|159129517 - gi\|159129517\|gb\|EDP54631.1\| 50S ribosomal protein L4 [Aspergillus fumigatus A1163] RM04_ASPFU - 54S ribosomal protein L4, mitochondrial OS=Aspergillus fumigatus GN=mrpl4 PE=3 SV=1 RM04_ASPFU - 54S ribosomal protein L4, mitochondrial OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS ...	156.0	[0..21]	[140..80]
RM04_COCIM - 54S ribosomal protein L4, mitochondrial OS=Coccidioides immitis (strain RS) GN=MRPL4 PE=3 SV=1 RM04_COCIM - 54S ribosomal protein L4, mitochondrial OS=Coccidioides immitis GN=MRPL4 PE=3 SV=1	154.0	[0..21]	[138..78]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSTLASAQK AAVRIPKGFV FPVPKVKSAP KVSDTHPLWN FFRDKQALPP PSEEAKFGRA  60
   61 WAAEELRWKS FNDLHGLWYN CLREKNLLFT QRAEMKRLQL TIPKASNERV LAVNKTMAAI 120
  121 KFVLWERQRA YTSAKQLEKQ KGSS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.1
Match:	1p85W
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits