YRC Public Data Repository - Protein Structure Prediction

Protein:	coq7
Organism:	Schizosaccharomyces pombe
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for coq7.

Description	E-value	Query Range	Subject Range
COQ7_MOUSE - 5-demethoxyubiquinone hydroxylase, mitochondrial OS=Mus musculus GN=Coq7 PE=1 SV=3	282.0	[0..3]	[216..11]
gi\|114661284, gi... - gi\|114661288\|ref\|XP_001153055.1\| PREDICTED: COQ7 protein isoform 6 [Pan troglodytes], gi\|114661286\|r...	277.0	[0..6]	[216..14]
gi\|109127736 - gi\|109127736\|ref\|XP_001083388.1\| PREDICTED: similar to COQ7 protein [Macaca mulatta]	277.0	[0..6]	[216..14]
gi\|117645862, gi... - gi\|117645862\|emb\|CAL38398.1\| hypothetical protein [synthetic construct], gi\|117644926\|emb\|CAL37929.1... gi\|25453484, gi\|... - gi\|25453484\|ref\|NP_057222.2\| COQ7 protein [Homo sapiens], gi\|13112023\|gb\|AAH03185.1\| Coenzyme Q7 hom... HGNC:2244\|MIM:60... - Q7 homolog, ubiquinone (yeast)	276.0	[0..6]	[216..14]
COQ7_BOVIN - 5-demethoxyubiquinone hydroxylase, mitochondrial OS=Bos taurus GN=COQ7 PE=2 SV=1	270.0	[0..6]	[216..14]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRRQLIPI ATKSVSPFLR SSITCRRISM GRKELSEKDS NILDSVIRVD QAGELGANQI  60
   61 YKGQHFILQF TDPKVAPTIQ HMWDQEKYHL ATFDNYVLKN RVRPTFLRPF WDIAGFALGA 120
  121 GTALLGTKAA MACTEAVETV IGGHYNDQLR ETAHLENKAP EFKEIRSHLA EFRDDELEHL 180
  181 NTAVEGWNAK EAPAHALLTN AIQMGCKAAI WMCKRF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.61
Match:	2fzfA
Description:	Hypothetical Protein Pfu-1136390-001 From Pyrococcus furiosus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	2.54239919926847	bayes_pls_golite062009
binding	2.15097517783454	bayes_pls_golite062009
nucleic acid binding	0.289249271377329	bayes_pls_golite062009
protein binding	0.222916509072005	bayes_pls_golite062009
catalytic activity	0.219299244701657	bayes_pls_golite062009
DNA binding	0.160477208079303	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: