YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC576.12c
Organism:	Schizosaccharomyces pombe
Length:	89 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC576.12c.

Description	E-value	Query Range	Subject Range
gi\|116205323, gi... - gi\|88176673\|gb\|EAQ84141.1\| predicted protein [Chaetomium globosum CBS 148.51], gi\|116205323\|ref\|XP_0...	107.0	[0..6]	[88..122]
gi\|145013831, gi... - gi\|39977541\|ref\|XP_370158.1\| hypothetical protein MGG_06655 [Magnaporthe grisea 70-15], gb\|EAA54998....	104.0	[0..2]	[88..88]
gi\|45185530, gi\|... - gi\|45185530\|ref\|NP_983246.1\| ACL158Wp [Ashbya gossypii ATCC 10895], gi\|44981248\|gb\|AAS51070.1\| ACL15... gi\|44981248 - gi\|44981248\|gb\|AAS51070.1\| ACL158Wp [Ashbya gossypii ATCC 10895]	99.0	[0..8]	[88..13]
gi\|40746830, gi\|... - gi\|67517421\|ref\|XP_658561.1\| hypothetical protein AN0957.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	98.0	[0..7]	[72..388]
gi\|2071991, gi\|1... - gi\|2071991\|gb\|AAB53637.1\| D9 splice variant 3 [Mus musculus], gi\|12025530\|ref\|NP_057874.1\| stimulate...	98.0	[0..10]	[88..100]
gi\|38524275 - gi\|38524275\|emb\|CAE75739.1\| hypothetical protein [Neurospora crassa]	97.0	[0..8]	[88..136]
gi\|46123289, gi\|... - gi\|46123289\|ref\|XP_386198.1\| hypothetical protein FG06022.1 [Gibberella zeae PH-1], gi\|42551289\|gb\|E...	96.0	[0..6]	[88..66]
gi\|85110029 - gi\|85110029\|ref\|XP_963202.1\| hypothetical protein NCU09478 [Neurospora crassa OR74A] gi\|32418718, gi\|... - gi\|32418718\|ref\|XP_329837.1\| predicted protein [Neurospora crassa], gi\|28924871\|gb\|EAA33966.1\| predi...	96.0	[0..8]	[88..126]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQESELLSL NTLARILTLY FSSEKGTKIT PSALELITQY LRIYSKEAVC RAYEEKKNSI  60
   61 MSSSENEDIV LELEDLENGI AAQLALDFS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.32
Match:	2bykA
Description:	Histone fold heterodimer of the Chromatin Accessibility Complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits