YRC Public Data Repository - Protein Structure Prediction

Protein:	vrp1
Organism:	Schizosaccharomyces pombe
Length:	309 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vrp1.

Description	E-value	Query Range	Subject Range
gi\|3511287, gi\|7... - pir\|\|T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...	155.0	[0..21]	[274..1433]
gi\|70876557 - gi\|70876557\|gb\|EAN89996.1\| hypothetical protein, conserved [Trypanosoma cruzi] gi\|71421620 - gi\|71421620\|ref\|XP_811847.1\| hypothetical protein [Trypanosoma cruzi strain CL Brener]	153.0	[0..3]	[308..167]
gi\|39579415, gi\|... - gi\|39579415\|emb\|CAE56721.1\| Hypothetical protein CBG24508 [Caenorhabditis briggsae], gi\|187040086\|em...	153.0	[0..1]	[308..171]
gi\|4808166 - gi\|4808166\|emb\|CAB42797.1\| largest subunit of the RNA polymerase II complex [Drosophila pseudoobscur...	152.0	[0..2]	[287..1512]
FP1_MYTCO - Adhesive plaque matrix protein OS=Mytilus coruscus GN=FP1 PE=2 SV=1	148.0	[0..3]	[306..264]
gi\|12642614 - gi\|12642614\|gb\|AAK00311.1\|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga ...	147.0	[0..34]	[294..1441]
gi\|63055728 - gi\|63055728\|gb\|AAY29131.1\| foot protein 1 variant 1 [Mytilus californianus]	145.0	[0..3]	[303..154]
FP1_MYTGA - Adhesive plaque matrix protein OS=Mytilus galloprovincialis GN=FP1 PE=2 SV=1	144.0	[0..5]	[307..323]
gi\|9587193, gi\|9... - gi\|9587199\|gb\|AAF89203.1\|AF272653_1 RNA polymerase II largest subunit [Drosophila subobscura], gi\|95...	142.0	[0..2]	[240..1590]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPAPPPPPP APAPAAAAPA PPLMTGDRSA LLNSIQKGKK LKKATTNDRS APVVGGGVVG  60
   61 ERKSNTPKSF AAPPVPTGAP SLPTSSNNTQ QAEERPSMPA LGGLFAGGMP KLRHIGKSSA 120
  121 SAAPPSAPAP PTPQSELRPP TSAPPRPSIP PPSPASAPPI PSKAPPIPSS LPPPAQPAAP 180
  181 VKSPPSAPSL PSAVPPMPPK VPPPPLSQAP VANTSSRPSS FAPPAGHAPN VTSESPKFPN 240
  241 RGPSIP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.958
Match:	2j63A
Description:	No description for 2j63A was found.

Predicted Domain #2

Region A:
Residues: [247-309]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SASVPPVPPS SYVLQQRPNR VDDHGRFHFK DDSYLPIPHP FLGVPKVYRG GSGTTVPLNL  60
   61 SSF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits