YRC Public Data Repository - Protein Structure Prediction

Protein:	did2
Organism:	Schizosaccharomyces pombe
Length:	178 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for did2.

Description	E-value	Query Range	Subject Range
gi\|74001062 - gi\|74001062\|ref\|XP_544799.2\| PREDICTED: similar to chromatin modifying protein 2B [Canis familiaris]	197.0	[0..3]	[176..615]
gi\|109493760 - gi\|109493760\|ref\|XP_001063932.1\| PREDICTED: similar to chromatin modifying protein 2B [Rattus norveg...	169.0	[0..3]	[176..282]
orf19.4307, orf1... - orf19.4307 CGDID:CAL0000893 Assembly 19, Contig19-10202 (157448, 158326) CDS, translated using codon... gi\|46442490, gi\|... - gi\|68470737\|ref\|XP_720614.1\| hypothetical protein CaO19.4307 [Candida albicans SC5314], gi\|68470476\|...	149.0	[0..2]	[178..115]
gi\|58258811, gi\|... - gi\|58258811\|ref\|XP_566818.1\| protein-vacuolar targeting-related protein [Cryptococcus neoformans var...	139.0	[0..5]	[177..76]
gi\|70997117, gi\|... - gi\|70997117\|ref\|XP_753313.1\| SNF7 family protein [Aspergillus fumigatus Af293], gi\|66850949\|gb\|EAL91...	138.0	[0..1]	[177..37]
gi\|240106962 - gi\|240106962\|gb\|EER25149.1\| SNF7 family protein [Coccidioides posadasii C735 delta SOWgp] gi\|119174847, gi... - gi\|90298537\|gb\|EAS28168.1\| hypothetical protein CIMG_09372 [Coccidioides immitis RS], gi\|119174847\|r...	137.0	[0..1]	[177..37]
gi\|152002610, gi... - gi\|83772924\|dbj\|BAE63052.1\| unnamed protein product [Aspergillus oryzae], gi\|152002610\|dbj\|BAF73610.... gi\|169779441 - gi\|169779441\|ref\|XP_001824185.1\| hypothetical protein [Aspergillus oryzae RIB40]	137.0	[0..2]	[177..38]
gi\|57918960, gi\|... - gi\|57918960\|ref\|XP_557202.1\| ENSANGP00000028397 [Anopheles gambiae str. PEST], gi\|55239291\|gb\|EAL401...	134.0	[0..11]	[177..62]
gi\|9802746, gi\|2... - gi\|9802746\|gb\|AAF99815.1\|AC034257_7 Similar to developmental protein [Arabidopsis thaliana], pir\|\|C8...	133.0	[0..2]	[178..27]

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Predicted Domain #1

Region A:
Residues: [1-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSMNFFTA HLSIAIAITK GNSEIARIYA SNAIRKQQES LNLLKLSSRI DAVSSRLQTA  60
   61 VTMRAVSGNM AGVVRGMDRA MKTMNLEMIS QVMDKFEAQF DDVNVQTGYM NKAMGSVTAV 120
  121 DTPQEDVDLL MQTVADEAGL EFNQNMNNNL SVPAASVPTP AAPVEDDNLQ ERLRALRS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	2gd5A
Description:	No description for 2gd5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits