YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1198.10c
Organism:	Schizosaccharomyces pombe
Length:	441 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1198.10c.

Description	E-value	Query Range	Subject Range
gi\|23125364, gi\|... - gi\|23125364\|ref\|ZP_00107301.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Nostoc punctiforme PC...	442.0	[0..5]	[438..1]
gi\|25293068 - pir\|\|AC2263 asparaginyl-tRNA synthetase [imported] - Nostoc sp. (strain PCC 7120) SYN_NOSS1 - Asparagine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=asnS PE=3 SV=1	438.0	[0..5]	[438..1]
gi\|75909835, gi\|... - gi\|75909835\|ref\|YP_324131.1\| asparaginyl-tRNA synthetase [Anabaena variabilis ATCC 29413], gi\|757035...	437.0	[0..5]	[438..1]
gi\|7437579 - gi\|7437579\|pir\|\|S75997 asparagine-tRNA ligase (EC 6.1.1.22) - Synechocystis sp. (strain PCC 6803) gi\|16332045, gi\|... - gi\|16332045\|ref\|NP_442773.1\| asparaginyl-tRNA synthetase [Synechocystis sp. PCC 6803], gi\|1001357\|db...	434.0	[0..4]	[436..51]
gi\|81299641, gi\|... - gi\|81299641\|ref\|YP_399849.1\| asparaginyl-tRNA synthetase [Synechococcus elongatus PCC 7942], gi\|8116...	433.0	[0..5]	[438..1]
SYN_SYNEL - Asparaginyl-tRNA synthetase OS=Synechococcus elongatus GN=asnS PE=3 SV=1 SYN_THEEB - Asparagine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=asnS PE=3 SV=1	432.0	[0..6]	[438..1]
SYN_DESAG - Asparagine--tRNA ligase OS=Desulfovibrio alaskensis (strain G20) GN=asnS PE=3 SV=1	431.0	[0..5]	[439..1]
gi\|71672237, gi\|... - gi\|71674182\|ref\|ZP_00671929.1\| Asparaginyl-tRNA synthetase, class IIb [Trichodesmium erythraeum IMS1...	429.0	[0..5]	[436..1]
gi\|56685678, gi\|... - gi\|56750719\|ref\|YP_171420.1\| asparaginyl-tRNA synthetase [Synechococcus elongatus PCC 6301], gi\|5668...	426.0	[0..5]	[438..1]

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Predicted Domain #1

Region A:
Residues: [1-441]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKFQLPKTL KSLWHHPHNG ELISINGWVR SIRKLKNVCF AMVSDGTCQQ ALQVVTSPEQ  60
   61 SKKLSYGASV NIEGQLAVSK NAKLGLQQYE LLAEKIKIYG QINDDNYPIQ KKHLTTEMLR 120
  121 QIPHLRLRTA KQGEIFRLRS DSLKALRQFF SSKDFTETNP PIITSSDCEG AGEVFTLTPQ 180
  181 ETHKNKSFER DDQKHFFDRP AFLTVSTQLH LEALALGLSR VYTISPAFRA EQSHTSRHLA 240
  241 EFWMLEAEVA FMTSLSQLTS LMEDMIKYTL NSLMEQNYHR DHWDQLLKPW KCMTYSEAIE 300
  301 ELSAVKKTWK YPPKWGNDLS SEHEKYLCEI LHKTPVFVTD YPQKIKPFYM KSSGPDTVAA 360
  361 VDLLVPQVGE LAGGSLRKDH LDEYKTYPPE LQWYLDLMKY SNAPHGGFGL GIERLIAFLE 420
  421 GENTNVKETI PFPRSVGSIF A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	110.0
Match:	1b8aA
Description:	Aspartyl-tRNA synthetase (AspRS)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits