YRC Public Data Repository - Protein Structure Prediction

Protein:	pyr1
Organism:	Schizosaccharomyces pombe
Length:	1185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pyr1.

Description	E-value	Query Range	Subject Range
gi\|1695643 - gi\|1695643\|dbj\|BAA11239.1\| pyruvate carboxylase [Schizosaccharomyces pombe]	1089.0	[0..1]	[1185..1]
gi\|49330018, gi\|... - gi\|49478462\|ref\|YP_038009.1\| pyruvate carboxylase [Bacillus thuringiensis serovar konkukian str. 97-...	1067.0	[0..31]	[1183..5]
gi\|47557102, gi\|... - gi\|47565822\|ref\|ZP_00236861.1\| pyruvate carboxylase [Bacillus cereus G9241], gi\|47557102\|gb\|EAL15431...	1065.0	[0..31]	[1183..5]
gi\|51975010, gi\|... - gi\|52141541\|ref\|YP_085288.1\| pyruvate carboxylase [Bacillus cereus E33L], gi\|51975010\|gb\|AAU16560.1\|...	1065.0	[0..31]	[1183..5]
gi\|228654461, gi... - gi\|229129224\|ref\|ZP_04258197.1\| Pyruvate carboxylase [Bacillus cereus BDRD-Cer4], gi\|228654461\|gb\|EE... gi\|229111417, gi... - gi\|229111417\|ref\|ZP_04240969.1\| Pyruvate carboxylase [Bacillus cereus Rock1-15], gi\|228672033\|gb\|EEL... gi\|228702243, gi... - gi\|229081199\|ref\|ZP_04213709.1\| Pyruvate carboxylase [Bacillus cereus Rock4-2], gi\|228702243\|gb\|EEL5... gi\|228723709, gi... - gi\|229047633\|ref\|ZP_04193221.1\| Pyruvate carboxylase [Bacillus cereus AH676], gi\|228723709\|gb\|EEL750... gi\|30022035, gi\|... - gi\|30022035\|ref\|NP_833666.1\| pyruvate carboxylase [Bacillus cereus ATCC 14579], gi\|29897591\|gb\|AAP10... gi\|229146518, gi... - gi\|229146518\|ref\|ZP_04274889.1\| Pyruvate carboxylase [Bacillus cereus BDRD-ST24], gi\|228637151\|gb\|EE...	1065.0	[0..31]	[1183..5]
gi\|42783042, gi\|... - gi\|42783042\|ref\|NP_980289.1\| pyruvate carboxylase [Bacillus cereus ATCC 10987], gi\|42738969\|gb\|AAS42...	1064.0	[0..31]	[1183..5]
gi\|89202981, gi\|... - gi\|89202981\|ref\|ZP_01181683.1\| Pyruvate carboxylase [Bacillus cereus subsp. cytotoxis NVH 391-98], g...	1062.0	[0..31]	[1183..5]
gi\|49180784, gi\|... - gi\|49186857\|ref\|YP_030109.1\| pyruvate carboxylase [Bacillus anthracis str. Sterne], gi\|49180784\|gb\|A... gi\|47504603, gi\|... - gi\|47529455\|ref\|YP_020804.1\| pyruvate carboxylase [Bacillus anthracis str. 'Ames Ancestor'], gi\|4750... gi\|30258663, gi\|... - gi\|30264018\|ref\|NP_846395.1\| pyruvate carboxylase [Bacillus anthracis str. Ames], gi\|30258663\|gb\|AAP... gi\|65321343, gi\|... - gi\|65321343\|ref\|ZP_00394302.1\| COG1038: Pyruvate carboxylase [Bacillus anthracis str. A2012], ref\|NP... gi\|165872192, gi... - gi\|165872192\|ref\|ZP_02216831.1\| pyruvate carboxylase [Bacillus anthracis str. A0488], gi\|164712139\|g... gi\|170129416, gi... - gi\|170705876\|ref\|ZP_02896339.1\| pyruvate carboxylase [Bacillus anthracis str. A0389], gi\|170129416\|g... gi\|167511066, gi... - gi\|167641016\|ref\|ZP_02399273.1\| pyruvate carboxylase [Bacillus anthracis str. A0193], gi\|167511066\|g... gi\|190563041, gi... - gi\|190566122\|ref\|ZP_03019041.1\| pyruvate carboxylase [Bacillus anthracis Tsiankovskii-I], gi\|1905630... gi\|177654299, gi... - gi\|177654299\|ref\|ZP_02936228.1\| pyruvate carboxylase [Bacillus anthracis str. A0174], gi\|172080789\|g... gi\|227816721, gi... - gi\|227816721\|ref\|YP_002816730.1\| pyruvate carboxylase [Bacillus anthracis str. CDC 684], gi\|22700485... gi\|229601337, gi... - gi\|229601337\|ref\|YP_002868247.1\| pyruvate carboxylase [Bacillus anthracis str. A0248], gi\|229265745\|... gi\|254736059 - gi\|254736059\|ref\|ZP_05193765.1\| pyruvate carboxylase [Bacillus anthracis str. Western North America ... gi\|254754271 - gi\|254754271\|ref\|ZP_05206306.1\| pyruvate carboxylase [Bacillus anthracis str. Vollum] gi\|254758038 - gi\|254758038\|ref\|ZP_05210065.1\| pyruvate carboxylase [Bacillus anthracis str. Australia 94]	1061.0	[0..31]	[1183..5]
PYC2 - Pyruvate carboxylase isoform, cytoplasmic enzyme that converts pyruvate to oxaloacetate; highly simi... PYC2_YEAST - Pyruvate carboxylase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PYC2 PE=1 SV=2	1059.0	[0..14]	[1185..2]
gi\|163863883, gi... - gi\|89206387\|ref\|ZP_01184946.1\| Pyruvate carboxylase [Bacillus weihenstephanensis KBAB4], gi\|89155649...	1059.0	[0..31]	[1183..5]

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Predicted Domain #1

Region A:
Residues: [1-1185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSKYDALLH NQSTNTNPFS KLQDRSSLLG EKFTKVLVAN RSEIAIRVFR TAHELSMHTV  60
   61 AIYSYEDRLS MHRQKADESY PIGKVGQYSP VGAYLAIDEI VSIAKRTGAN LVHPGYGFLS 120
  121 ENAEFARKVN EAGMQFVGPS PEVIDSLGDK TKARAIAIRC GVPVVPGTPG PVEHYEEAEA 180
  181 FVKEYGLPVI IKAAMGGGGR GMRVVRSADT LKESFERARS EALASFGDGT VFIERFLDKP 240
  241 KHIEIQLMAD KAGNVIHLHE RDCSVQRRHQ KVVEIAPAKD LDPKIRQALY DDAIKIAKEV 300
  301 KYCNAGTAEF LLDQKGRHYF IEINPRIQVE HTITEEITGV DIVSAQLHVA AGFTLPEIGL 360
  361 TQDKISTRGF AIQCRVTTED PNNGFAPDIG KIEVYRSAGG NGVRLDGANG FAGSVITPHY 420
  421 DSMLVKCTCH DATYEYTRRK MIRSLIEFRV RGVKTNIPFV LRLLMHDTFI QGNCWTTFID 480
  481 DTPELFQLYR SRNRAQKLLA YLGDLAVNGS SIKGQNGEPA LKSEIVMPVL LDSTGNQIDV 540
  541 SHPSEKGWRK LLLDNGPAAF AKAVRNHKRG LIMDTTWRDA HQSLLATRVR TIDLVNIAPY 600
  601 TSHALASAYS LEMWGGATFD VSMRFLHECP WDRLRRLRKL VPNIPFQMLL RGANGLCYSS 660
  661 LPDNVIYFFC EQAKKNGIDI FRVFDALNDV NNLSLGIDAA KRAGGVVEAT MCYSGDMLNP 720
  721 KKKYNLDYYV NLVDKMVEMG IHILGIKDMA GVMKPKAARL LISAIREKHP ELPIHVHTHD 780
  781 SAGTAVASMA AALEAGADVV DVATDSMSGL TSQPSFGAVL ASVDGTDKQL EFDNNQLREI 840
  841 DSYWAQMRLL YSPFESEIKG TDSDVYNHEI PGGQLTNLKF QATSLGLGTQ WAETKKAYIE 900
  901 ANKLLGDIIK VTPTSKVVGD LAQFMVQNKL SAEDVENRAT TLDFPASVLD FFQGLMGQPY 960
  961 GGFPEPLRTN VLKGRRQPLT DRPGKFLPAA DFDAIRKLLS EKFGVSSDCD IAAYTQFPGV1020
 1021 FEEYRQFVDR YGDLTTVPTK FFLSRPEMNE EMHVEIDQGK TLIVKFVALG PLNPRTGQRE1080
 1081 VYFELNGENR HVTVEDKKAA IETVTRPRAD PGNPGHVAAP MSGTIVEIRV KEGAKVKKGD1140
 1141 IIAVLSAMKM EIVISAPHSG VLKSLAVVQG DSVNGGDLCA VLEHE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2qf7A
Description:	No description for 2qf7A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits