YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC823.13c
Organism:	Schizosaccharomyces pombe
Length:	317 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC823.13c.

Description	E-value	Query Range	Subject Range
SHE9_NEUCR - Sensitive to high expression protein 9 homolog, mitochondrial OS=Neurospora crassa GN=she-9 PE=3 SV=... SHE9_NEUCR - Sensitive to high expression protein 9 homolog, mitochondrial OS=Neurospora crassa (strain ATCC 2469...	326.0	[0..5]	[225..170]
gi\|46136287, gi\|... - gi\|46136287\|ref\|XP_389835.1\| hypothetical protein FG09659.1 [Gibberella zeae PH-1], gi\|42553135\|gb\|E...	325.0	[0..2]	[226..151]
SHE9_CANAL - Sensitive to high expression protein 9 homolog, mitochondrial OS=Candida albicans (strain SC5314 / A... SHE9_CANAL - Sensitive to high expression protein 9 homolog, mitochondrial OS=Candida albicans GN=SHE9 PE=3 SV=1	323.0	[0..5]	[226..231]
gi\|8247211 - gi\|8247211\|emb\|CAB92912.1\| She9 protein [Candida albicans]	322.0	[0..5]	[231..231]
SHE9_EMENI - Sensitive to high expression protein 9 homolog, mitochondrial OS=Emericella nidulans GN=she9 PE=3 SV... SHE9_EMENI - Sensitive to high expression protein 9 homolog, mitochondrial OS=Emericella nidulans (strain FGSC A4...	320.0	[0..5]	[237..129]
gi\|39948471, gi\|... - gi\|39948471\|ref\|XP_363104.1\| hypothetical protein MGG_08688 [Magnaporthe grisea 70-15], gb\|EAA51166....	317.0	[0..6]	[223..296]
SHE9_YEAST - Sensitive to high expression protein 9, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 20450... SHE9 - Mitochondrial inner membrane protein required for normal mitochondrial morphology, may be involved i...	307.0	[0..2]	[233..133]
SHE9_ASPTN - Sensitive to high expression protein 9 homolog, mitochondrial OS=Aspergillus terreus (strain NIH 262...	299.0	[0..5]	[214..134]
gi\|159126685 - gi\|159126685\|gb\|EDP51801.1\| mitochondrion biogenesis protein (She9), putative [Aspergillus fumigatus... SHE9_ASPFU - Sensitive to high expression protein 9 homolog, mitochondrial OS=Aspergillus fumigatus GN=she9 PE=3 ... SHE9_ASPFU - Sensitive to high expression protein 9 homolog, mitochondrial OS=Neosartorya fumigata (strain ATCC M...	297.0	[0..5]	[209..135]
SHE9_ASHGO - Sensitive to high expression protein 9 homolog, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 ... SHE9_ASHGO - Sensitive to high expression protein 9 homolog, mitochondrial OS=Ashbya gossypii GN=SHE9 PE=3 SV=1	294.0	[0..5]	[228..121]

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Predicted Domain #1

Region A:
Residues: [1-317]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQRLSQSIK GFAARFPKIY NKGNGSVQQT ILQASQRLNE LTGYSSIEAL KNAVVKQETK  60
   61 LRDFRLSAAE ARKRYIEAVE KRSSSQREVN ELLQRRSSWS TIDLERFTKL YRDDYSNKEE 120
  121 EIKAQEDVDV AERRVEEAQN GLVRSILSRY HEEQVWSDKI RQASTWGTWG LMGINVVLFV 180
  181 VVQLILEPRK RKRLVREAVD HIDKERELEI NDELKKISEK LDKKGEAVGQ ALELTSPKID 240
  241 NKNLPKNSAS LILPPINYDT FHSFLDSLKY FLSRFLSTDY RIQLTYRQLS ILATKFTVGG 300
  301 GVIIYTFIHL FGLAFKR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.4
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits