YRC Public Data Repository - Protein Structure Prediction

Protein:	ppk11
Organism:	Schizosaccharomyces pombe
Length:	312 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ppk11.

Description	E-value	Query Range	Subject Range
gi\|119178099, gi... - gi\|90299540\|gb\|EAS29171.1\| hypothetical protein CIMG_07917 [Coccidioides immitis RS], gi\|119178099\|r... gi\|240104759 - gi\|240104759\|gb\|EER22954.1\| serine/threonine protein kinase, putative [Coccidioides posadasii C735 d...	334.0	[0..1]	[301..296]
gi\|85068237 - gi\|85068237\|ref\|XP_962134.1\| protein kinase [Neurospora crassa OR74A] gi\|28923731, gi\|... - gi\|32414173\|ref\|XP_327566.1\| hypothetical protein ( (AY029769) protein kinase 1 [Cryphonectria paras...	333.0	[0..1]	[301..334]
gi\|67539606, gi\|... - gi\|67539606\|ref\|XP_663577.1\| hypothetical protein AN5973.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	333.0	[0..1]	[312..288]
gi\|110761240 - gi\|110761240\|ref\|XP_396874.3\| PREDICTED: similar to Akt1 CG4006-PA, isoform A [Apis mellifera]	331.0	[0..1]	[302..179]
gi\|114196568, gi... - gi\|115384658\|ref\|XP_001208876.1\| serine/threonine-protein kinase gad8 [Aspergillus terreus NIH2624],...	331.0	[0..1]	[301..289]
gi\|169783450 - gi\|169783450\|ref\|XP_001826187.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83774931 - gi\|83774931\|dbj\|BAE65054.1\| unnamed protein product [Aspergillus oryzae]	331.0	[0..1]	[301..333]
gi\|71001428, gi\|... - gi\|71001428\|ref\|XP_755395.1\| serine/threonine protein kinase (YPK1) [Aspergillus fumigatus Af293], g...	330.0	[0..1]	[301..289]
gi\|169620806, gi... - gi\|169620806\|ref\|XP_001803814.1\| hypothetical protein SNOG_13609 [Phaeosphaeria nodorum SN15], gi\|11...	330.0	[0..1]	[301..278]
gi\|71003930, gi\|... - gi\|71003930\|ref\|XP_756631.1\| hypothetical protein UM00484.1 [Ustilago maydis 521], ref\|XP_398099.1\| ...	329.0	[0..1]	[311..237]
gi\|116195634, gi... - gi\|88180328\|gb\|EAQ87796.1\| hypothetical protein CHGG_04415 [Chaetomium globosum CBS 148.51], gi\|1161...	329.0	[0..1]	[301..289]

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Predicted Domain #1

Region A:
Residues: [1-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKHQYRDLQ LIGQGSFGSV FRAQDVESSK IVALKVVDLD ATKDQIETLT QEINFLIDLN  60
   61 SVHITKYYAS FVDGFRLWIT MEYCDGGSCL DLLKLSGTFS ERVIAEVMRQ VLEALVYLHG 120
  121 QGKMHRDIKA ANILTMKDGL VKLADFGVSG QLESLRDKND DFVGTPFWMA PEVVKQTGYN 180
  181 YKADIWSLGI TAYELATGEP PYSGIHPMKV LLLIPKHSPP SLERSKFSRA FCDFVSNCLK 240
  241 KNPKDRATAE YLSKHKFIKK YCPNTSVKEV VASYAKWKES ELLPEATPYN STMGNSANTI 300
  301 DEVVWDFGTV RR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.09691
Match:	1f3mC
Description:	pak1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits