YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1A4.05
Organism:	Schizosaccharomyces pombe
Length:	700 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1A4.05.

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	254.0	[0..1]	[663..1863]
gi\|50757613 - gi\|50757613\|ref\|XP_415578.1\| PREDICTED: similar to myosin heavy chain [Gallus gallus]	230.0	[0..16]	[665..816]
gi\|34870884, gi\|... - ref\|XP_213345.2\| similar to Myosin heavy chain, skeletal muscle, adult 1 (Myosin heavy chain IIx/d) ...	230.0	[0..2]	[665..853]
MYH1_MOUSE - Myosin-1 OS=Mus musculus GN=Myh1 PE=1 SV=1	230.0	[0..2]	[665..853]
gi\|76643957 - gi\|76643957\|ref\|XP_882639.1\| PREDICTED: similar to myosin, heavy polypeptide 8, skeletal muscle, per...	229.0	[0..2]	[665..286]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSAFTSKS QLKGIDGSFN DPFRQPSMNL PTPPHDDGLP SIPRSTALPN LSNRLSPYSH  60
   61 RNYLPIPEAD SRNLEVLNSI SLTTGSVVNQ INKLYQRSCD NANYLQDLRS LIL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.69897
Match:	2fxmA
Description:	No description for 2fxmA was found.

Predicted Domain #2

Region A:
Residues: [114-453]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QTPTAEANAT QVTESLNQIQ KILQEASSKD REQIVQVIKE LNKGNSLEVR RELGNCLAHL  60
   61 KKGTLNIDNA LQASLQKYWK ELQYFNVSKD KLLSLEESIK LLSARLEETD TPSSTHWIEI 120
  121 NAGFKEVGDE LSENFQRKQE ILSGLQNNVI LRTNNRKPVG SDGSNSNFNG GEEQMDSKDQ 180
  181 EEIQDYLNSL LSVHEKDGVL LQKFHNSYVQ YQKLAVALSK YENFDADKLF QQMNLAKQSN 240
  241 ETLLQTLTEQ TDQLLSFKET MDSFKFILGP SMENQALQQG ILAEQQDLVA QLRDIVLRSE 300
  301 TLAENPSNMP GSCLPGASSN TADEFTEQLN LLKNEVARLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.30103
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [454-634]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AICPSPNSGI NASVLTNADN LEKENLLLVN NNAFKVDDRS VSSVALDDHN RQLQMNVEEL  60
   61 EGKKADLTSK INRLDKDFVK LNTTYSLLTD QVKTKQLALQ EIESRVIRLE ERLNMLQKLS 120
  121 MQPAISSSSE FVPIESHPSS SAVVPIEEPK NSIIEKKRVP HNAARNSVNL EVTLPNSKKR 180
  181 F

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.522879
Match:	2i1jA
Description:	No description for 2i1jA was found.

Predicted Domain #4

Region A:
Residues: [635-700]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSFSGSSSKL PVRPSTALTD KRKPSWSRRL AAAIGFSSGS PEKKHVITSS DAGHQRSKSR  60
   61 SFSSKM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits