YRC Public Data Repository - Protein Structure Prediction

Protein:	pex14
Organism:	Schizosaccharomyces pombe
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pex14.

Description	E-value	Query Range	Subject Range
gi\|47940239 - gi\|47940239\|gb\|AAH72094.1\| LOC432141 protein [Xenopus laevis]	200.0	[0..34]	[279..768]
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	192.0	[0..34]	[279..1765]
gi\|47229711 - gi\|47229711\|emb\|CAG06907.1\| unnamed protein product [Tetraodon nigroviridis]	174.0	[0..34]	[280..774]
gi\|3668187 - gi\|3668187\|dbj\|BAA33452.1\| myosin heavy chain [Theragra chalcogramma]	171.0	[0..34]	[284..773]
gi\|76643939 - gi\|76643939\|ref\|XP_872424.1\| PREDICTED: similar to myosin, heavy polypeptide 4, skeletal muscle, par...	166.0	[0..34]	[285..596]
gi\|42556325 - gi\|42556325\|gb\|AAS19751.1\| myosin heavy chain [Gasterosteus aculeatus]	164.0	[0..34]	[253..767]
gi\|50757613 - gi\|50757613\|ref\|XP_415578.1\| PREDICTED: similar to myosin heavy chain [Gallus gallus]	161.0	[0..34]	[279..722]

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Predicted Domain #1

Region A:
Residues: [1-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREDLLRNSV EFLREKTVLD APDVKKIEFL KSKGLTAEEI QEAFKLAKNP LFPSYPRFEN  60
   61 TSNFVSRDWR DWFIMGVIST GFAWSAYSLV KKYIAPMFRA PSQNAYEADK NALDAKFLEA 120
  121 HKILENLDEQ TRKLSERTEK QQDELDIALD DLEETLNTLK RTSENRDREI ARISQDVYTM 180
  181 STITLPQSLE QIKKSQEEAL QNLSREISSL RCLQTDSKKD DTFATTSNSS IPVLENPLDT 240
  241 SEGFQTKKVG TASLPDWQIS MHNEASKNID FNDIDPAESY VAEDAY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.045757
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits