YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC26H8.13c
Organism:	Schizosaccharomyces pombe
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC26H8.13c.

Description	E-value	Query Range	Subject Range
gi\|85111838 - gi\|85111838\|ref\|XP_964128.1\| hypothetical protein gi\|11289092, gi\|... - gi\|32419096\|ref\|XP_330026.1\| hypothetical protein ( hypothetical protein B14D6.570 [imported] - Neur...	108.0	[0..32]	[96..122]
gi\|38566937 - gi\|38566937\|emb\|CAE76240.1\| hypothetical protein [Neurospora crassa]	108.0	[0..32]	[96..99]
gi\|46107354, gi\|... - gi\|46107354\|ref\|XP_380736.1\| hypothetical protein FG00560.1 [Gibberella zeae PH-1], gi\|42544327\|gb\|E...	98.0	[0..60]	[106..102]
gi\|38110167, gi\|... - gi\|39951875\|ref\|XP_363654.1\| hypothetical protein MG01580.4 [Magnaporthe grisea 70-15], gb\|EAA55929....	75.0	[0..38]	[95..144]
gi\|88185734, gi\|... - gi\|88185734\|gb\|EAQ93202.1\| hypothetical protein CHGG_01437 [Chaetomium globosum CBS 148.51], gi\|1161...	64.0	[0..51]	[92..123]
gi\|119195897, gi... - gi\|90307338\|gb\|EAS36969.1\| predicted protein [Coccidioides immitis RS], gi\|119195897\|ref\|XP_00124855...	51.0	[0..60]	[93..174]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIKRGFIGN TPKPSRCKRT KPIFREPNSP VNGGLVYNHP LHTAAAVKEA FSENRGFRTC  60
   61 HVCHRKNNMR LKVGTCESCK KHTCAICIRQ CHKCESNVCS MCSKQERTFE SEAFCPSCYP 120
  121 LDTY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.98
Match:	1zbdB
Description:	Effector domain of rabphilin-3a
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits