YRC Public Data Repository - Protein Structure Prediction

Protein:	chr1
Organism:	Schizosaccharomyces pombe
Length:	456 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for chr1.

Description	E-value	Query Range	Subject Range
gi\|69255787, gi\|... - gi\|69255787\|ref\|ZP_00605529.1\| Sel1-like repeat [Magnetococcus sp. MC-1], gi\|68248152\|gb\|EAN30235.1\|...	209.0	[0..95]	[449..372]
gi\|84375186, gi\|... - gi\|84394204\|ref\|ZP_00992934.1\| hypothetical protein V12B01_19651 [Vibrio splendidus 12B01], gi\|84375...	195.0	[0..101]	[451..221]
gi\|30248264, gi\|... - gi\|30248264\|ref\|NP_840334.1\| hypothetical protein NE0240 [Nitrosomonas europaea ATCC 19718], gi\|3018...	192.0	[0..107]	[449..635]
gi\|53732839 - gi\|53732839\|ref\|ZP_00349593.1\| COG0790: FOG: TPR repeat, SEL1 subfamily [Haemophilus influenzae R284...	181.0	[0..163]	[449..29]
gi\|88934891, gi\|... - gi\|88934891\|ref\|ZP_01140530.1\| Sel1-like repeat [Geobacter uraniumreducens Rf4], gi\|88918355\|gb\|EAR3...	178.0	[0..95]	[450..105]
gi\|53750914, gi\|... - gi\|54297129\|ref\|YP_123498.1\| hypothetical protein lpp1174 [Legionella pneumophila str. Paris], gi\|53...	177.0	[0..81]	[449..99]
gi\|52628517, gi\|... - gi\|52841406\|ref\|YP_095205.1\| TPR repeat-containing protein [Legionella pneumophila subsp. pneumophil...	177.0	[0..81]	[449..103]
gi\|53753948, gi\|... - gi\|54294116\|ref\|YP_126531.1\| hypothetical protein lpl1180 [Legionella pneumophila str. Lens], gi\|537...	177.0	[0..57]	[449..75]
gi\|71675440, gi\|... - gi\|71675440\|ref\|ZP_00673185.1\| TPR repeat:Sel1-like repeat [Trichodesmium erythraeum IMS101], gi\|716...	173.0	[0..62]	[439..977]
gi\|41719589, gi\|... - gi\|91774230\|ref\|YP_566922.1\| tetratricopeptide protein [Methanococcoides burtonii DSM 6242], gi\|9171...	173.0	[0..101]	[447..199]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPASTSIPET PSKLPDALLV NSDPASKVDN VSVKIEQESP LALEGSPLPT VSDVLPETNN  60
   61 AHEEVSSSSW SLSS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [75-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDSIMSYDSL SDDVSVLSFL DCPLTTFETA PSIASFSNSA ADVSSHSRSS SSWSAKLSRF  60
   61 TKHASKPSLS SNSSDSSFSK SGSES

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.0
Match:	2j9qA
Description:	No description for 2j9qA was found.

Predicted Domain #3

Region A:
Residues: [160-456]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NALSSRGSFE LEPHGIHRHV SRAKRLLSKF YSKFHHKKED SSFDPLAPLV FAPNTSRVLR  60
   61 VTNEANASAI SLEKATSLSS QEQPGSEIKK ELSLYDHEFD QILDLAIKAK KDGNLENAIE 120
  121 FLEYIMPEVA SQQNFVPYEL AELYKQRGTS QDLKSILPLY MLAASLGHDR SSFLVGEAFF 180
  181 YGTYGARENK LRALQYYHLA NDKGNADAML ALCKLYLRGL PGHIFPSSRR AFEYAHRAAM 240
  241 LGHAPACYVL GKFYETGVGC VKDLAKSEAG FRAGLINDSP ITDADALQIA STLVLLQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	1ouvA
Description:	Helicobacter cysteine rich protein C (HcpC)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.736853224379565	bayes_pls_golite062009
protein binding	0.328664825514855	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: