YRC Public Data Repository - Protein Structure Prediction

Protein:	vps20
Organism:	Schizosaccharomyces pombe
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vps20.

Description	E-value	Query Range	Subject Range
gi\|74001062 - gi\|74001062\|ref\|XP_544799.2\| PREDICTED: similar to chromatin modifying protein 2B [Canis familiaris]	191.0	[0..3]	[200..586]
gi\|109493760 - gi\|109493760\|ref\|XP_001063932.1\| PREDICTED: similar to chromatin modifying protein 2B [Rattus norveg...	161.0	[0..3]	[200..253]
gi\|50731660 - gi\|50731660\|ref\|XP_418312.1\| PREDICTED: similar to Snf7 homologue associated with Alix 3 [Gallus gal...	156.0	[0..9]	[203..255]
gi\|114620768 - gi\|114620768\|ref\|XP_528179.2\| PREDICTED: similar to Chromatin modifying protein 4C [Pan troglodytes]	141.0	[0..2]	[221..125]
gi\|58270340, gi\|... - gi\|58270340\|ref\|XP_572326.1\| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21], g... gi\|134117768, gi... - gi\|50255132\|gb\|EAL17871.1\| hypothetical protein CNBL1330 [Cryptococcus neoformans var. neoformans B-...	141.0	[0..2]	[222..72]
gi\|10177676 - gi\|10177676\|dbj\|BAB11036.1\| unnamed protein product [Arabidopsis thaliana]	139.0	[0..1]	[204..1]
gi\|70997117, gi\|... - gi\|70997117\|ref\|XP_753313.1\| SNF7 family protein [Aspergillus fumigatus Af293], gi\|66850949\|gb\|EAL91...	138.0	[0..2]	[221..9]

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Predicted Domain #1

Region A:
Residues: [1-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVNSSKIND KDRSILSIKE QRDKLLRYSK RLEKIEQLEI DIARKCLRDS DKRGALRALK  60
   61 AKKLYSGLIT QTYGQLGNIE QLLSTIEFTL IQKDVMFGLQ EGTNLIRQLQ ADMPLERVGR 120
  121 ICNDRDEAMS YVDEVNDMLQ GRMSRDQEDE IQEELDSLIR EQEDEKVKDL EKPGFTPSTG 180
  181 VDVLPSVPLK NAIPSLDESF PKAASVSNTS SAVVIDEELR KDPVLG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.522879
Match:	2gd5A
Description:	No description for 2gd5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits