YRC Public Data Repository - Protein Structure Prediction

Protein:	ies6
Organism:	Schizosaccharomyces pombe
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ies6.

Description	E-value	Query Range	Subject Range
gi\|157279003, gi... - gi\|76672705\|ref\|XP_612826.2\| PREDICTED: hypothetical protein isoform 1 [Bos taurus], gi\|157427934\|re...	144.0	[0..6]	[116..70]
gi\|73961737 - gi\|73961737\|ref\|XP_547606.2\| PREDICTED: similar to CG12659-PB [Canis familiaris]	144.0	[0..6]	[116..124]
gi\|109121959 - gi\|109121959\|ref\|XP_001104744.1\| PREDICTED: similar to CG12659-PB [Macaca mulatta]	143.0	[0..6]	[116..70]
gi\|114672825, gi... - gi\|114672829\|ref\|XP_001135216.1\| PREDICTED: similar to C18orf37 protein isoform 2 [Pan troglodytes],... gi\|119621762, gi... - gi\|29124572\|gb\|AAH48989.1\| C18orf37 protein [Homo sapiens], gi\|119621762\|gb\|EAX01357.1\| chromosome 1...	143.0	[0..6]	[116..15]
IN80C_MOUSE - INO80 complex subunit C OS=Mus musculus GN=Ino80c PE=1 SV=1	143.0	[0..6]	[116..69]
INO80C - INO80 complex subunit C gi\|114672823 - gi\|114672823\|ref\|XP_001135459.1\| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes]	142.0	[0..6]	[116..70]
IN80C_RAT - INO80 complex subunit C OS=Rattus norvegicus GN=Ino80c PE=2 SV=1	142.0	[0..6]	[116..69]
gi\|50736082 - gi\|50736082\|ref\|XP_419041.1\| PREDICTED: hypothetical protein [Gallus gallus]	139.0	[0..1]	[116..58]

Back

Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKNSSVDSL DISLLARPFR NPNYKAQPRR NRNLRQIIQN DPVQNEPSKF SYSSIEAPPS  60
   61 VLPQPKYCDV TGLLAIYTDP KTRLRYHNKE IYGLIRELPS GADQEYLKLR SSDVVLK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.06
Match:	1x4sA
Description:	Solution structure of zinc finger HIT domain in protein FON
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits