YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC823.11
Organism:	Schizosaccharomyces pombe
Length:	411 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC823.11.

Description	E-value	Query Range	Subject Range
gi\|39957584, gi\|... - gi\|39957584\|ref\|XP_364339.1\| hypothetical protein MG09184.4 [Magnaporthe grisea 70-15], gb\|EAA55377....	269.0	[0..18]	[344..174]
DS1P1_YEAST - Dihydrosphingosine 1-phosphate phosphatase LCB3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2... LCB3 - Long-chain base-1-phosphate phosphatase with specificity for dihydrosphingosine-1-phosphate, regulat... gi\|207344105 - gi\|207344105\|gb\|EDZ71354.1\| YJL134Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190409371 - gi\|190409371\|gb\|EDV12636.1\| dihydrosphingosine-1-phosphate phophatase [Saccharomyces cerevisiae RM11...	266.0	[0..4]	[406..13]
gi\|46123301, gi\|... - gi\|46123301\|ref\|XP_386204.1\| hypothetical protein FG06028.1 [Gibberella zeae PH-1], gi\|42551295\|gb\|E...	246.0	[0..12]	[344..39]
orf19.3329, orf1... - orf19.3329 CGDID:CAL0004101 Assembly 19, Contig19-10173 (77263, 75788) CDS, reverse complemented, tr... gi\|68475071, gi\|... - gi\|68475608\|ref\|XP_718152.1\| hypothetical protein CaO19.3329 [Candida albicans SC5314], gi\|68475071\|...	239.0	[0..7]	[400..33]
gi\|45185945, gi\|... - gi\|45185945\|ref\|NP_983661.1\| ACR259Wp [Ashbya gossypii ATCC 10895], gi\|44981735\|gb\|AAS51485.1\| ACR25... gi\|44981735 - gi\|44981735\|gb\|AAS51485.1\| ACR259Wp [Ashbya gossypii ATCC 10895]	237.0	[0..4]	[406..16]
gi\|85075896 - gi\|85075896\|ref\|XP_955841.1\| hypothetical protein [Neurospora crassa OR74A] gi\|18376322, gi\|... - gi\|32404298\|ref\|XP_322762.1\| hypothetical protein [Neurospora crassa], gi\|28916862\|gb\|EAA26605.1\| hy...	228.0	[0..56]	[344..2]
gi\|115399410, gi... - gi\|115399410\|ref\|XP_001215294.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	226.0	[0..18]	[346..12]
gi\|49074142, gi\|... - gi\|71019053\|ref\|XP_759757.1\| hypothetical protein UM03610.1 [Ustilago maydis 521], ref\|XP_401225.1\| ...	223.0	[0..5]	[346..100]
gi\|111062677 - gi\|111062677\|gb\|EAT83797.1\| hypothetical protein SNOG_08629 [Phaeosphaeria nodorum SN15]	220.0	[0..18]	[345..24]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVHKKKNVDI PSSQKYLGIQ HVNFYSNAFG KESLRFQLRE LILPIVRKET RLLYKIQSFF  60
   61 RNPWLDVYFM YTATL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.711	a.46.2	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
View	Download	0.620	a.65.1	Annexin
View	Download	0.591	a.118.11	Cytochrome c oxidase subunit E
View	Download	0.580	a.46.2	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
View	Download	0.579	a.46.2	Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain

Predicted Domain #2

Region A:
Residues: [76-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTHVFFMLAL PIFFWSGCIY YTLDITQLFA AGVYFSGCIK DYFCLPRPRS PPMVRLTLSS  60
   61 DAEYEYGFPS THTTNAMATG FYSLFLLLSM SDSMSSISYY FLLSLVLLYI ASISLGRIYC 120
  121 GMHGFMDVST GTILGVTLAI FQWKYADFFH NVWSSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.09691
Match:	2akcA
Description:	No description for 2akcA was found.

Predicted Domain #3

Region A:
Residues: [232-334]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STSVPILSVV LALFFIWFHP QPAERCICLE DSISFISVIM GIDLGTWFAS PESLSHLHDN  60
   61 LNSYFLLKFF VRVLFGVCMI LIWKSFAKQA LLAVLPPIFK SLR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [335-411]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSYLEPKSQS EKGIRAATGS NHSPGNIGTE LGVITSHQSH PHPVRFDIET IARIIVYSGI  60
   61 GFLCTYFAPK VFLKWKI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.673	a.64.1	Saposin
View	Download	0.526	a.70.1	N-terminal domain of the delta subunit of the F1F0-ATP synthase
View	Download	0.490	a.35.1	lambda repressor-like DNA-binding domains
View	Download	0.409	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.406	a.35.1	lambda repressor-like DNA-binding domains

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits