YRC Public Data Repository - Protein Structure Prediction

Protein:	taf2
Organism:	Schizosaccharomyces pombe
Length:	1174 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for taf2.

Description	E-value	Query Range	Subject Range
gi\|40744651, gi\|... - gi\|67522074\|ref\|XP_659098.1\| hypothetical protein AN1494.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	872.0	[0..1]	[1174..1]
gi\|169766432 - gi\|169766432\|ref\|XP_001817687.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765542 - gi\|83765542\|dbj\|BAE55685.1\| unnamed protein product [Aspergillus oryzae]	822.0	[0..1]	[1173..1]
gi\|85111588 - gi\|85111588\|ref\|XP_964008.1\| hypothetical protein NCU02052 [Neurospora crassa OR74A] gi\|38566902, gi\|... - gi\|38566902\|emb\|CAE76206.1\| related to TSM1-component of TFIID complex [Neurospora crassa], gi\|32417...	813.0	[0..13]	[1137..30]
gi\|115491151, gi... - gi\|115491151\|ref\|XP_001210203.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	805.0	[0..10]	[1168..18]
gi\|46135781, gi\|... - gi\|46135781\|ref\|XP_389582.1\| hypothetical protein FG09406.1 [Gibberella zeae PH-1], gi\|42554555\|gb\|E...	800.0	[0..12]	[1172..37]
gi\|38105643, gi\|... - gi\|39943114\|ref\|XP_361094.1\| hypothetical protein MG03637.4 [Magnaporthe grisea 70-15], gb\|EAA52042....	797.0	[0..5]	[1140..11]
gi\|49071890, gi\|... - gi\|71015037\|ref\|XP_758766.1\| hypothetical protein UM02619.1 [Ustilago maydis 521], ref\|XP_400234.1\| ...	786.0	[0..10]	[1173..13]
gi\|44985333, gi\|... - gi\|45199193\|ref\|NP_986222.1\| AFR674Cp [Ashbya gossypii ATCC 10895], gi\|44985333\|gb\|AAS54046.1\| AFR67... gi\|44985333 - gi\|44985333\|gb\|AAS54046.1\| AFR674Cp [Ashbya gossypii ATCC 10895]	784.0	[0..1]	[1170..14]
gi\|70983546, gi\|... - gi\|70983546\|ref\|XP_747300.1\| transcription initiation factor TFIID subunit TSM1/127kD, putative [Asp... gi\|159123694 - gi\|159123694\|gb\|EDP48813.1\| transcription initiation factor TFIID subunit TSM1/127kD, putative [Aspe...	782.0	[0..1]	[1119..1]
gi\|119188493, gi... - gi\|90303639\|gb\|EAS33270.1\| hypothetical protein CIMG_04294 [Coccidioides immitis RS], gi\|119188493\|r...	739.0	[0..12]	[1173..19]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLVDVPAR GTSHQKVAID IDFASQTIIG RTDITVNPID SNLQKIVLDC YQAEIHSVYV  60
   61 NGDLTKFSYS DALKKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.522879
Match:	1hs6A
Description:	Leukotriene A4 hydrolase C-terminal domain; Leukotriene A4 hydrolase N-terminal domain; Leukotriene A4 hydrolase catalytic domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [77-916]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RIDEPNSTVN QHHQLNLQYE ALMNDLGGIN IFLSKPPGDE LRPLIVSIDF SVHQPIFGIT  60
   61 FVGIDPVDHR YPHVFTNNSI IPYSTCSWLP CVDGIWERST WEFEITLPKT LSSLMHREKT 120
  121 QPSDLNNGAN GVDGHDDNYE NNRFDHQFNL SNEPDLLEDH DIEVICCGDL LDQVTHPKDM 180
  181 RKKTVYFSVT TPVAPNYIAF AAGPFKHINL TDFREPEDDD AMGSSAIDIT GYYLPKYAEE 240
  241 VENTCVFLYK AMDFFVREYG SYPFNSFKLC FVDETNFPII STPSLVISSN SILYPKDSLD 300
  301 QIYDSTKTLT WALASQWIGV YLIPKAWSDL WLIYGLSYYI CGLFLKKLMG NNDYRFRLKK 360
  361 QVYRLLELDI GKPPISQRNI NIPIDPNTLD FIALKSPLVI HILERRLTKT GGSLGMSRVI 420
  421 PKLLLQVMSG DMLNGCLSTS HFLKTCEKAS HMRLDVFAQQ WIYGYGYPIF RVVQRFNRKK 480
  481 MIIEMGIDQV QTKEAPRAPM SDKNFLSDAI RHLNNESIPT GLPVFSGPMT IRIHEADGTP 540
  541 YEHVVELKDS FTKLDIQYNT KYKRISRNRS TKNVKRDGDH NGDDSDYVIR SLGDVLQSDE 600
  601 DIERWHLYDY TKEEEDTMAT EAFEWIRVDA DFEWICDLRV RQPEHMYVSQ LQQDRDVVAQ 660
  661 LETIRHFTSE SFTVSQQVST VLLRTLLDNR YYYGIRQEAA RALARCAIPE LDWVGYYHLR 720
  721 MAYLEKFCFK DSTIPKSNDF SNITEYYVKC AMLESFPNIR DRKGVTPSSV KKLLLDLLCY 780
  781 NDNANNEFSD AYFICLLIDS LVEGLIPRGE TVQYAFSDPE HMEFVNQVIN EIDRYMRIDA 840
  841

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	138.0
Match:	2hpoA
Description:	No description for 2hpoA was found.

Predicted Domain #3

Region A:
Residues: [917-1174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CMPSFKNIIT CKSLKAKLRL AQTFHLEFGP KELLPYTQEG NYVLVRCIAF NLMLQAGALK  60
   61 YTPLIKYIFY ILTNDLSPVV RRSLLYSVQD GLGALARGGT KSDVASEDLI VEEDITKAVE 120
  121 KRIDITSRAS ISGAIEALRN DLGQNHDFAT EIWNAINNPK SDLLTKRNLL MICRVLYKAK 180
  181 SSLLVTLKIP SLIPRLRAIH LGKGKIVIKK APLKQITSKT KEKSTSPTPP SITINPIKPK 240
  241 GPTLKIKLTN LRSTPPSH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits