YRC Public Data Repository - Protein Structure Prediction

Protein:	tht2
Organism:	Schizosaccharomyces pombe
Length:	201 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tht2.

Description	E-value	Query Range	Subject Range
gi\|73947193 - gi\|73947193\|ref\|XP_541329.2\| PREDICTED: similar to FYVE, RhoGEF and PH domain containing protein 3 (...	165.0	[0..12]	[187..312]
gi\|7209309 - gi\|7209309\|dbj\|BAA92229.1\| FLJ00004 protein [Homo sapiens]	165.0	[0..12]	[187..367]
FGD4_MOUSE - FYVE, RhoGEF and PH domain-containing protein 4 OS=Mus musculus GN=Fgd4 PE=1 SV=1	164.0	[0..8]	[195..351]
gi\|75773397 - gi\|75773397\|gb\|AAI05140.1\| FGD3 protein [Bos taurus]	164.0	[0..12]	[187..307]
gi\|109112322, gi... - gi\|109112324\|ref\|XP_001104353.1\| PREDICTED: FYVE, RhoGEF and PH domain containing 3 isoform 6 [Macac...	164.0	[0..12]	[187..303]

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Predicted Domain #1

Region A:
Residues: [1-201]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENQVSSFLI DSPMEWKTYM KSLSDDNPSF GDVTVNLTKI SVSSKNAKSY AEEMYNYVTQ  60
   61 EMVFISERSR LLLRAKRRLY KNQSLMKKTS VSTSNTVKMV FMSLAKQIEQ MLKFCMMVYS 120
  121 KLCEAFETTL KVAKEFQICD SSQEWFFQFQ LGYHRKQMEL QMLSFVAEWL VLTQHYTDAL 180
  181 NDSAKTLYDI MESSHKAAQK V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.09691
Match:	2pz1A
Description:	No description for 2pz1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits