YRC Public Data Repository - Protein Structure Prediction

Protein:	mrpl10
Organism:	Schizosaccharomyces pombe
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrpl10.

Description	E-value	Query Range	Subject Range
gi\|42545121, gi\|... - gi\|46111669\|ref\|XP_382892.1\| hypothetical protein FG02716.1 [Gibberella zeae PH-1], gi\|42545121\|gb\|E...	224.0	[0..1]	[197..62]
gi\|45190529, gi\|... - gi\|45190529\|ref\|NP_984783.1\| AEL078Cp [Ashbya gossypii ATCC 10895], gi\|44983471\|gb\|AAS52607.1\| AEL07... gi\|44983471 - gi\|44983471\|gb\|AAS52607.1\| AEL078Cp [Ashbya gossypii ATCC 10895]	220.0	[0..1]	[210..28]
gi\|46100047, gi\|... - gi\|71020295\|ref\|XP_760378.1\| hypothetical protein UM04231.1 [Ustilago maydis 521], ref\|XP_401846.1\| ...	207.0	[0..28]	[197..156]
orf19.11016, orf... - MRPL10 CGDID:CAL0005873 Assembly 19, Contig19-10183 (18637, 17786) CDS, reverse complemented, transl... gi\|238882275 - gi\|238882275\|gb\|EEQ45913.1\| conserved hypothetical protein [Candida albicans WO-1] gi\|46436555, gi\|... - gi\|68482267\|ref\|XP_714891.1\| likely mitochondrial ribosomal protein (E. coli L15) [Candida albicans ...	204.0	[0..2]	[210..28]
gi\|50305559, gi\|... - gi\|50305559\|ref\|XP_452739.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641872\|emb\|CAH0159... gi\|49641872 - gi\|49641872\|emb\|CAH01590.1\| KLLA0C12133p [Kluyveromyces lactis]	195.0	[0..1]	[200..54]
gi\|31240343, gi\|... - gi\|31240343\|ref\|XP_320585.1\| AGAP011946-PA [Anopheles gambiae str. PEST], gi\|21287938\|gb\|EAA00259.1\|... AGAP011946-PA - mRpL15: 39S ribosomal protein L15, mitochondrial\|protein_coding\|3L:35475971:35476930:1\|gene:AGAP0119...	195.0	[0..4]	[219..24]
mRpL15-PA - The gene mitochondrial ribosomal protein L15 is referred to in FlyBase by the symbol Dmel\mRpL15 (CG...	193.0	[0..4]	[219..25]
gi\|22136330, gi\|... - gi\|22136330\|gb\|AAM91243.1\| unknown protein [Arabidopsis thaliana], gi\|21553371\|gb\|AAM62464.1\| unknow...	193.0	[0..2]	[181..66]
gi\|49526693 - gi\|49526693\|emb\|CAG60320.1\| unnamed protein product [Candida glabrata] gi\|49526693, gi\|... - gi\|50289903\|ref\|XP_447383.1\| hypothetical protein CAGL0I03036g [Candida glabrata CBS138], gi\|4952669...	185.0	[0..1]	[200..22]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNDLNNSAN YQSKKRVGRG PASGLGKTSG RGHKGSGQRR GRRIKPGFEG GQTPITKLFP  60
   61 KVGHSTGHLK KPLRLGLGRV QEWIDRGRLD ASKTITMKDL LDSRCCRGIK HGVELTADEP 120
  121 GLLKTAISIE VSKATVQAIQ QIKNAGGSIT TVYFSPLALR AHL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.30103
Match:	1p85J
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.4893803036544	bayes_pls_golite062009
structural molecule activity	8.91740015840503	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [164-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPSSFRTPPR PPLPVSKKDI RYYTNPHFAG YLANVKNIRE LYYGDQRFPY EPIVKDK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: