YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC126.08c
Organism:	Schizosaccharomyces pombe
Length:	312 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC126.08c.

Description	E-value	Query Range	Subject Range
gi\|113610358, gi... - gi\|115470447\|ref\|NP_001058822.1\| Os07g0130300 [Oryza sativa (japonica cultivar-group)], gi\|113610358...	267.0	[0..1]	[310..1]
gi\|116312039, gi... - gi\|125549128\|gb\|EAY94950.1\| hypothetical protein OsI_016183 [Oryza sativa (indica cultivar-group)], ... gi\|125591085 - gi\|125591085\|gb\|EAZ31435.1\| hypothetical protein OsJ_014918 [Oryza sativa (japonica cultivar-group)]	259.0	[0..29]	[310..29]

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Predicted Domain #1

Region A:
Residues: [1-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFSVKNVFL LGIFGFVLGA LAETSHLERL SLEAPYINHG MRNLWWEYGG STVIDRKNGI  60
   61 FLTQDVQNQQ GWISTRLPTP SSSFEVLFQF RINSESTSLF GDGLAFFLAA ERAKPGPVFG 120
  121 FTDKFNGYGI FIDTYNNHRP GTLFPRVIVM KGDGHTPYDY ENDGKANEIA SCSALNVRGN 180
  181 DYNLGKLKYD KNAKKLRFEI AYQGSSSFIK CFDLNEVELP LTTFMSFSAH TGDLSESHEI 240
  241 ASILSRTITD IDDEGTPEIP AEELKGTTYG QKKGSFKKRL IILLLSLIVI FSIFALRSYQ 300
  301 VQQEKNRRTT VL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.30103
Match:	2duoA
Description:	No description for 2duoA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits