YRC Public Data Repository - Protein Structure Prediction

Protein:	gpi3
Organism:	Schizosaccharomyces pombe
Length:	456 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gpi3.

Description	E-value	Query Range	Subject Range
gi\|46108156, gi\|... - gi\|46108156\|ref\|XP_381136.1\| hypothetical protein FG00960.1 [Gibberella zeae PH-1], gi\|42546668\|gb\|E...	323.0	[0..1]	[430..10]
PIGA_MOUSE - N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein OS=Mus musculus GN=Piga PE=2 SV=1 gi\|7441626, gi\|3... - pir\|\|I52484 gene PIG-A protein - mouse, gi\|30387809\|gb\|AAP32009.1\| PIG-A [Mus sp.]	317.0	[0..1]	[426..37]
gi\|39943844, gi\|... - gi\|39943844\|ref\|XP_361459.1\| hypothetical protein MGG_03933 [Magnaporthe grisea 70-15], gb\|EAA50174....	316.0	[0..1]	[426..9]
gi\|34880068, gi\|... - gi\|34880068\|ref\|XP_343784.1\| PREDICTED: similar to N-acetylglucosaminyl-phosphatidylinositol biosynt...	315.0	[0..1]	[426..37]
gi\|114687855 - gi\|114687855\|ref\|XP_520945.2\| PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subuni...	314.0	[0..1]	[426..37]
PIGA - phosphatidylinositol glycan anchor biosynthesis, class A	313.0	[0..1]	[426..37]
gi\|109129987 - gi\|109129987\|ref\|XP_001100879.1\| PREDICTED: similar to phosphatidylinositol N-acetylglucosaminyltran...	312.0	[0..1]	[426..37]
gi\|68476923, gi\|... - gi\|68477114\|ref\|XP_717350.1\| hypothetical protein CaO19.487 [Candida albicans SC5314], gi\|68476923\|r... gi\|238879865 - gi\|238879865\|gb\|EEQ43503.1\| phosphatidylinositol N-acetylglucosaminyltransferase GPI3 subunit [Candi... orf19.8117, orf1... - SPT14 CGDID:CAL0005841 Assembly 19, Contig19-10053 (48406, 47048) CDS, reverse complemented, transla...	312.0	[0..1]	[422..7]

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Predicted Domain #1

Region A:
Residues: [1-369]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSDFFFPQP GGIESHIFQL SQRLIDLGHK VIVITHAYKD RVGVRYLTNG LTVYYVPLHT  60
   61 VYRETTFPSF FSFFPIFRNI VIRENIEIVH GHGSLSFLCH DAILHARTMG LKTCFTDHSL 120
  121 FGFADAGSIV TNKLLKFTMS DVNHVICVSH TCRENTVLRA VLNPKRVSVI PNALVAENFQ 180
  181 PDPSKASKDF LTIVVISRLY YNKGIDLLIA VIPRICAQHP KVRFVIAGDG PKSIDLEQMR 240
  241 EKYMLQDRVE MLGSVRHDQV RDVMVRGHIY LHPSLTEAFG TVLVEAASCG LYVISTKVGG 300
  301 VPEVLPSHMT RFARPEEDDL ADTLSSVITD YLDHKIKTET FHEEVKQMYS WIDVAERTEK 360
  361 VYDSICSEN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.522879
Match:	2gejA
Description:	No description for 2gejA was found.

Predicted Domain #2

Region A:
Residues: [370-456]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLRLIDRLKL YYGCGQWAGK LFCLLIAIDY LVMVLLEWIW PASDIDPAVD RVSSTFKISK  60
   61 QNFDESLVLT DPKKKTKIKT ACLKDAQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.738	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.620	a.16.1	S15/NS1 RNA-binding domain
View	Download	0.643	a.28.3	Retrovirus capsid protein C-terminal domain
View	Download	0.590	f.15.1	Small-conductance potassium channel
View	Download	0.845	a.112.1	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits