YRC Public Data Repository - Protein Structure Prediction

Protein:	lys4
Organism:	Schizosaccharomyces pombe
Length:	418 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lys4.

Description	E-value	Query Range	Subject Range
gi\|238729289, gi... - gi\|77977568\|ref\|ZP_00833013.1\| COG0119: Isopropylmalate/homocitrate/citramalate synthases [Yersinia ...	426.0	[0..34]	[414..4]
gi\|238725074, gi... - gi\|77976116\|ref\|ZP_00831649.1\| COG0119: Isopropylmalate/homocitrate/citramalate synthases [Yersinia ...	426.0	[0..34]	[414..4]
gi\|238718475, gi... - gi\|77962082\|ref\|ZP_00825907.1\| COG0119: Isopropylmalate/homocitrate/citramalate synthases [Yersinia ...	425.0	[0..34]	[414..4]
gi\|238714551, gi... - gi\|77958251\|ref\|ZP_00822288.1\| COG0119: Isopropylmalate/homocitrate/citramalate synthases [Yersinia ...	425.0	[0..34]	[414..4]
gi\|89104762, gi\|... - gi\|89104762\|ref\|ZP_01177296.1\| COG0119: Isopropylmalate/homocitrate/citramalate synthases [Yersinia ... LEU1_YERPA - 2-isopropylmalate synthase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=leuA PE=3 SV=1 gi\|165992051, gi... - gi\|166008712\|ref\|ZP_02229610.1\| 2-isopropylmalate synthase [Yersinia pestis biovar Antiqua str. E197... LEU1_YERPS - 2-isopropylmalate synthase OS=Yersinia pseudotuberculosis GN=leuA PE=3 SV=1 gi\|165919820, gi... - gi\|165928209\|ref\|ZP_02224041.1\| 2-isopropylmalate synthase [Yersinia pestis biovar Orientalis str. F... gi\|167049327, gi... - gi\|167401302\|ref\|ZP_02306802.1\| 2-isopropylmalate synthase [Yersinia pestis biovar Antiqua str. UG05... gi\|166206878, gi... - gi\|166212132\|ref\|ZP_02238167.1\| 2-isopropylmalate synthase [Yersinia pestis biovar Antiqua str. B420... gi\|45443381, gi\|... - gi\|45443381\|ref\|NP_994920.1\| 2-isopropylmalate synthase [Yersinia pestis biovar Microtus str. 91001]... gi\|16120862, gi\|... - gi\|218927730\|ref\|YP_002345605.1\| 2-isopropylmalate synthase [Yersinia pestis CO92], gi\|16120862\|ref\|... LEU1_YERPS - 2-isopropylmalate synthase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=leuA PE=3 S... LEU1_YERPG - 2-isopropylmalate synthase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=leuA PE=3 SV=1 LEU1_YERP3 - 2-isopropylmalate synthase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=leuA PE... LEU1_YERPN - 2-isopropylmalate synthase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=leuA PE=3 SV=1 LEU1_YERPE - 2-isopropylmalate synthase OS=Yersinia pestis GN=leuA PE=3 SV=1 gi\|167469504 - gi\|167469504\|ref\|ZP_02334208.1\| 2-isopropylmalate synthase [Yersinia pestis FV-1] gi\|166960132, gi... - gi\|167421995\|ref\|ZP_02313748.1\| 2-isopropylmalate synthase [Yersinia pestis biovar Orientalis str. M... LEU1_YERPB - 2-isopropylmalate synthase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=leuA PE=3 SV... gi\|149289839, gi... - gi\|150260431\|ref\|ZP_01917159.1\| 2-isopropylmalate synthase [Yersinia pestis CA88-4125], gi\|149289839... LEU1_YERPY - 2-isopropylmalate synthase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=leuA PE=3 S... gi\|229836878, gi... - gi\|229836878\|ref\|ZP_04457043.1\| 2-isopropylmalate synthase [Yersinia pestis Pestoides A], gi\|2297058... LEU1_YERPP - 2-isopropylmalate synthase OS=Yersinia pestis (strain Pestoides F) GN=leuA PE=3 SV=1 gi\|229840424, gi... - gi\|229840424\|ref\|ZP_04460583.1\| 2-isopropylmalate synthase [Yersinia pestis biovar Orientalis str. P... gi\|229843035, gi... - gi\|229843035\|ref\|ZP_04463185.1\| 2-isopropylmalate synthase [Yersinia pestis biovar Orientalis str. I...	425.0	[0..34]	[414..4]
gi\|22127519, gi\|... - gi\|22127519\|ref\|NP_670942.1\| 2-isopropylmalate synthase [Yersinia pestis KIM], gi\|21960619\|gb\|AAM871... gi\|167054582, gi... - gi\|167426484\|ref\|ZP_02318237.1\| 2-isopropylmalate synthase [Yersinia pestis biovar Mediaevalis str. ...	423.0	[0..34]	[414..4]
LEU1_PHOLL - 2-isopropylmalate synthase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 1055... LEU1_PHOLL - 2-isopropylmalate synthase OS=Photorhabdus luminescens subsp. laumondii GN=leuA PE=3 SV=1	422.0	[0..34]	[414..4]
LEU1_BUCAP - 2-isopropylmalate synthase OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=leuA PE=... gi\|219730356\|emb... - unnamed protein product [Buchnera aphidicola], unnamed protein product [Buchnera aphidicola], unname... LEU1_BUCAP - 2-isopropylmalate synthase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=leuA PE=3 SV=1	422.0	[0..34]	[414..4]
gi\|114548727, gi... - gi\|114770546\|ref\|ZP_01448036.1\| 2-isopropylmalate synthase [alpha proteobacterium HTCC2255], gi\|1145... gi\|114770546 - gi\|114770546\|ref\|ZP_01448036.1\| 2-isopropylmalate synthase [alpha proteobacterium HTCC2255] gi\|221133354 - gi\|221133354\|ref\|ZP_03559659.1\| 2-isopropylmalate synthase [Glaciecola sp. HTCC2999]	420.0	[0..33]	[415..3]
LEU12_ARATH - 2-isopropylmalate synthase 2, chloroplastic OS=Arabidopsis thaliana GN=IPMS2 PE=1 SV=1	419.0	[0..2]	[408..58]

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Predicted Domain #1

Region A:
Residues: [1-418]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSEANGTE TIKPPMNGNP YGPNPSDFLS RVNNFSIIES TLREGEQFAN AFFDTEKKIQ  60
   61 IAKALDNFGV DYIELTSPVA SEQSRQDCEA ICKLGLKCKI LTHIRCHMDD ARVAVETGVD 120
  121 GVDVVIGTSQ YLRKYSHGKD MTYIIDSATE VINFVKSKGI EVRFSSEDSF RSDLVDLLSL 180
  181 YKAVDKIGVN RVGIADTVGC ATPRQVYDLI RTLRGVVSCD IECHFHNDTG MAIANAYCAL 240
  241 EAGATHIDTS ILGIGERNGI TPLGALLARM YVTDREYITH KYKLNQLREL ENLVADAVEV 300
  301 QIPFNNYITG MCAFTHKAGI HAKAILANPS TYEILKPEDF GMSRYVHVGS RLTGWNAIKS 360
  361 RAEQLNLHLT DAQAKELTVR IKKLADVRTL AMDDVDRVLR EYHADLSDAD RITKEASA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.045757
Match:	2qf7A
Description:	No description for 2qf7A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits