YRC Public Data Repository - Protein Structure Prediction

Protein:	rpn8
Organism:	Schizosaccharomyces pombe
Length:	324 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpn8.

Description	E-value	Query Range	Subject Range
RPN8_NEUCR - 26S proteasome regulatory subunit rpn-8 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 7... RPN8_NEUCR - 26S proteasome regulatory subunit rpn-8 OS=Neurospora crassa GN=rpn-8 PE=3 SV=1	351.0	[0..3]	[323..2]
gi\|88179274, gi\|... - gi\|88179274\|gb\|EAQ86742.1\| 26S proteasome regulatory subunit rpn-8 [Chaetomium globosum CBS 148.51],...	349.0	[0..3]	[323..2]
gi\|38102580, gi\|... - gi\|39973589\|ref\|XP_368185.1\| 26S proteasome regulatory subunit rpn-8 [Magnaporthe grisea 70-15], gb\|...	346.0	[0..3]	[323..2]
gi\|2599117 - gi\|2599117\|gb\|AAB84057.1\| proteasome regulatory subunit 12 [Hypocrea jecorina]	346.0	[0..3]	[324..2]
gi\|40743112, gi\|... - gi\|67537902\|ref\|XP_662725.1\| hypothetical protein AN5121.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	339.0	[0..3]	[324..2]
gi\|83770963 - gi\|83770963\|dbj\|BAE61096.1\| unnamed protein product [Aspergillus oryzae] gi\|220698656, gi... - gi\|238490061\|ref\|XP_002376268.1\| 26S proteasome regulatory particle subunit Rpn8, putative [Aspergil... gi\|169764070 - gi\|169764070\|ref\|XP_001727935.1\| hypothetical protein [Aspergillus oryzae RIB40]	337.0	[0..3]	[322..2]
gi\|66848132, gi\|... - gi\|70991302\|ref\|XP_750500.1\| 26S proteasome regulatory particle subunit Rpn8 [Aspergillus fumigatus ... gi\|159130971 - gi\|159130971\|gb\|EDP56084.1\| 26S proteasome regulatory particle subunit Rpn8, putative [Aspergillus f...	337.0	[0..3]	[324..2]
gi\|111070286 - gi\|111070286\|gb\|EAT91406.1\| hypothetical protein SNOG_01757 [Phaeosphaeria nodorum SN15]	336.0	[0..3]	[307..2]
gi\|115385919, gi... - gi\|115385919\|ref\|XP_001209506.1\| 26S proteasome regulatory subunit rpn-8 [Aspergillus terreus NIH262...	336.0	[0..3]	[323..2]
gi\|157908 - gi\|157908\|gb\|AAA28695.1\| Mov34	335.0	[0..13]	[323..7]

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Predicted Domain #1

Region A:
Residues: [1-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPAVSSETS TIVPQQVIVH PLVLLSAVDS YNRSAKGTKR RVVGILLGQN NGDVVNVANS  60
   61 YAIPFEEDEK NASVWFLDHN FMESMNEMFK KINANEKLVG WYHTGPQLRP SDLEINNLLK 120
  121 KYIPNPVLVI IDVKPKSVGL PTNAYFAIDE IEDDGSKSSR TFVHLPSSIE AEEAEEIGVE 180
  181 HLLRDTRDAS VGTLATRVTQ QAQSLQGLGQ RLTEIADYLR KVVDGQLP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.045757
Match:	2o95A
Description:	No description for 2o95A was found.

Predicted Domain #2

Region A:
Residues: [229-324]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 INHAILAELQ SVFNLLPNIF SGPVVSEQAL ESEAQRAFNV NSNDQLMSIY ISSIVRAVIA  60
   61 LHDLLDSLAA SKAMEQQDIK PTVQNGEVSA NAEQKA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits