YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC9.08c
Organism:	Schizosaccharomyces pombe
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC9.08c.

Description	E-value	Query Range	Subject Range
gi\|62740082 - gi\|62740082\|gb\|AAH94046.1\| Gpsn2 protein [Mus musculus]	246.0	[0..27]	[282..123]
gi\|60551245 - gi\|60551245\|gb\|AAH91002.1\| Gpsn2 protein [Xenopus tropicalis]	243.0	[0..23]	[282..103]
gi\|256994, gi\|21... - gi\|256994\|gb\|AAB23534.1\| SC2 [Rattus sp.], gi\|2144098\|pir\|\|I56573 synaptic glycoprotein SC2 [importe... TECR_RAT - Very-long-chain enoyl-CoA reductase OS=Rattus norvegicus GN=Tecr PE=1 SV=1	242.0	[0..27]	[282..69]
gi\|109123711 - gi\|109123711\|ref\|XP_001112313.1\| PREDICTED: glycoprotein, synaptic 2 [Macaca mulatta]	241.0	[0..27]	[282..84]
gi\|157750406 - gi\|157750406\|ref\|XP_001678916.1\| Hypothetical protein CBG11196 [Caenorhabditis briggsae AF16] gi\|39590267, gi\|... - gi\|39590267\|emb\|CAE66005.1\| Hypothetical protein CBG11196 [Caenorhabditis briggsae], gi\|187030527\|em...	240.0	[0..32]	[282..71]
TECR_BOVIN - Very-long-chain enoyl-CoA reductase OS=Bos taurus GN=TECR PE=2 SV=1	239.0	[0..27]	[282..69]
gi\|13111809 - gi\|13111809\|gb\|AAH00174.2\|AAH00174 Unknown (protein for IMAGE:2901253) [Homo sapiens]	238.0	[0..27]	[282..65]
art-1 - status:Confirmed UniProt:Q9N5Y2 protein_id:AAF39753.1	237.0	[0..32]	[282..71]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFYSDYLKLL KIFVVGVFPC TLFVNAPHGK LAKQSKLFSK GYISGRVGWV LMELVAPLTF  60
   61 LYAIRNNRHF ESTLPSLGDG SNRDYLDSCR KVLAGMFLVH YANRALVSPL LMAP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [115-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVSPMHWTVF VSAVLFNFLN GMSIGLYLVQ ASVQHHPVSI IRRYIGMFLW LMGWLGNMYH  60
   61 DNILYDLRRS SNKKKDPDNL DTVQSENSYY RIPYGGLFQY VSCPNYFCEW IEWFGCYLAA 120
  121 GPSAEPFWWF FLSEILLMLP RALKAHQWYC KKFPKYPANR RAIIPFLM

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	25.744727
Match:	PF02544.7
Description:	No description for PF02544.7 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.723	N/A	N/A	a.2.7	tRNA-binding arm
View	Download	0.541	N/A	N/A	a.61.1	Retroviral matrix proteins
View	Download	0.538	N/A	N/A	a.2.11	Fe,Mn superoxide dismutase (SOD), N-terminal domain
View	Download	0.529	N/A	N/A	a.7.4	Smac/diablo
View	Download	0.518	N/A	N/A	a.2.7	tRNA-binding arm

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits